Information for motif10


Reverse Opposite:

p-value:1e-13
log p-value:-3.025e+01
Information Content per bp:1.581
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif34.88%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif4.15%
Average Position of motif in Targets174.2 +/- 84.3bp
Average Position of motif in Background94.9 +/- 24.7bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.21
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0090.1_TEAD1/Jaspar

Match Rank:1
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--CATTCTTC--
CACATTCCTCCG

PB0170.1_Sox17_2/Jaspar

Match Rank:2
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----CATTCTTC----
GACCACATTCATACAAT

PB0178.1_Sox8_2/Jaspar

Match Rank:3
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CATTCTTC-----
ACATTCATGACACG

PB0028.1_Hbp1_1/Jaspar

Match Rank:4
Score:0.66
Offset:-6
Orientation:reverse strand
Alignment:------CATTCTTC--
NNCATTCATTCATNNN

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CATTCTTC
NCCATTGTTC

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer

Match Rank:6
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CATTCTTC--
GYCATCMATCAT

POL002.1_INR/Jaspar

Match Rank:7
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CATTCTTC
TCAGTCTT-

MA0515.1_Sox6/Jaspar

Match Rank:8
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CATTCTTC-
CCATTGTTTT

PB0137.1_Irf3_2/Jaspar

Match Rank:9
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------CATTCTTC
NNGCACCTTTCTCC

MA0077.1_SOX9/Jaspar

Match Rank:10
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CATTCTTC
CCATTGTTC