Information for motif3


Reverse Opposite:

p-value:1e-14
log p-value:-3.348e+01
Information Content per bp:1.443
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif53.49%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif8.73%
Average Position of motif in Targets116.3 +/- 74.6bp
Average Position of motif in Background138.5 +/- 64.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.43
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:1
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----CTTGRWYA
TGACCTTGAN--

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:2
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----CTTGRWYA
TGACCTTGAV--

PB0158.1_Rfx3_2/Jaspar

Match Rank:3
Score:0.60
Offset:-7
Orientation:forward strand
Alignment:-------CTTGRWYA--------
ACTGACCCTTGGTTACCACAAAG

PB0014.1_Esrra_1/Jaspar

Match Rank:4
Score:0.59
Offset:-9
Orientation:reverse strand
Alignment:---------CTTGRWYA
NNNNATGACCTTGANTN

MA0505.1_Nr5a2/Jaspar

Match Rank:5
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------CTTGRWYA-
GCTGACCTTGAACTN

PH0111.1_Nkx2-2/Jaspar

Match Rank:6
Score:0.57
Offset:-7
Orientation:forward strand
Alignment:-------CTTGRWYA--
ATAACCACTTGAAAATT

TATA-Box(TBP)/Promoter/Homer

Match Rank:7
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CTTGRWYA---
CCTTTTATAGNC

PB0159.1_Rfx4_2/Jaspar

Match Rank:8
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CTTGRWYA----
TACCCTAGTTACCGA

POL008.1_DCE_S_I/Jaspar

Match Rank:9
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CTTGRWYA
GCTTCC---

PH0113.1_Nkx2-4/Jaspar

Match Rank:10
Score:0.56
Offset:-7
Orientation:forward strand
Alignment:-------CTTGRWYA-
TAAGCCACTTGAAATT