Information for motif19


Reverse Opposite:

p-value:1e-7
log p-value:-1.824e+01
Information Content per bp:1.530
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif32.56%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif5.20%
Average Position of motif in Targets134.0 +/- 78.1bp
Average Position of motif in Background141.3 +/- 68.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:1
Score:0.71
Offset:3
Orientation:forward strand
Alignment:AGGGTTAATG-
---GKTAATGR

MA0046.1_HNF1A/Jaspar

Match Rank:2
Score:0.67
Offset:2
Orientation:forward strand
Alignment:AGGGTTAATG------
--GGTTAATAATTAAC

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:AGGGTTAATG---
---GTTAATGGCC

PH0138.1_Pitx2/Jaspar

Match Rank:4
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----AGGGTTAATG---
TGAAGGGATTAATCATC

PH0073.1_Hoxc9/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AGGGTTAATG------
NNAATTAATGACCNNN

PH0130.1_Otx2/Jaspar

Match Rank:6
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----AGGGTTAATG---
TGTAGGGATTAATTGTC

PH0129.1_Otx1/Jaspar

Match Rank:7
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----AGGGTTAATG---
AGAGGGGATTAATTTAT

PH0025.1_Dmbx1/Jaspar

Match Rank:8
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----AGGGTTAATG--
TGAACCGGATTAATGAA

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AGGGTTAATG
NGGGATTA---

PH0035.1_Gsc/Jaspar

Match Rank:10
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----AGGGTTAATG---
NNAAGGGATTAACGANT