Information for motif6


Reverse Opposite:

p-value:1e-14
log p-value:-3.336e+01
Information Content per bp:1.716
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif37.21%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif1.75%
Average Position of motif in Targets144.6 +/- 75.3bp
Average Position of motif in Background56.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.62
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0091.1_Zbtb3_1/Jaspar

Match Rank:1
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------CCTGCAGCCAGG
AATCGCACTGCATTCCG-

Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:CCTGCAGCCAGG------
---SCAGYCADGCATGAC

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:CCTGCAGCCAGG
---BCAGACWA-

MA0524.1_TFAP2C/Jaspar

Match Rank:4
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCAGCCAGG
TGCCCTGGGGCNANN

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.54
Offset:4
Orientation:forward strand
Alignment:CCTGCAGCCAGG
----CAGCC---

MA0510.1_RFX5/Jaspar

Match Rank:6
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CCTGCAGCCAGG---
NCTGTTGCCAGGGAG

PB0159.1_Rfx4_2/Jaspar

Match Rank:7
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CCTGCAGCCAGG---
NNNGTAACTANGNNA

MA0024.2_E2F1/Jaspar

Match Rank:8
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CCTGCAGCCAGG
CCTCCCGCCCN-

MA0522.1_Tcf3/Jaspar

Match Rank:9
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----CCTGCAGCCAGG
CACAGCTGCAG-----

MA0493.1_Klf1/Jaspar

Match Rank:10
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-CCTGCAGCCAGG
GGCCACACCCA--