Information for motif22


Reverse Opposite:

p-value:1e-7
log p-value:-1.627e+01
Information Content per bp:1.820
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif23.26%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif2.77%
Average Position of motif in Targets174.8 +/- 76.2bp
Average Position of motif in Background61.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.30
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:1
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:GGTGACCA
--TGACCT

PB0153.1_Nr2f2_2/Jaspar

Match Rank:2
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--GGTGACCA------
NNNNTGACCCGGCGCG

MA0160.1_NR4A2/Jaspar

Match Rank:3
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:GGTGACCA-
-GTGACCTT

PB0057.1_Rxra_1/Jaspar

Match Rank:4
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---GGTGACCA------
TGTCGTGACCCCTTAAT

PB0053.1_Rara_1/Jaspar

Match Rank:5
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GGTGACCA------
NNNGTGACCTTTGNNN

PB0133.1_Hic1_2/Jaspar

Match Rank:6
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---GGTGACCA-----
GGGTGTGCCCAAAAGG

MA0093.2_USF1/Jaspar

Match Rank:7
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----GGTGACCA
GCCACGTGACC-

MA0258.2_ESR2/Jaspar

Match Rank:8
Score:0.65
Offset:-7
Orientation:reverse strand
Alignment:-------GGTGACCA
AGGNCANNGTGACCT

MA0071.1_RORA_1/Jaspar

Match Rank:9
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:GGTGACCA----
--TGACCTTGAT

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:10
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GGTGACCA-------
CATAAGACCACCATTAC