Information for motif1


Reverse Opposite:

p-value:1e-15
log p-value:-3.657e+01
Information Content per bp:1.705
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif39.53%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif3.75%
Average Position of motif in Targets154.2 +/- 85.0bp
Average Position of motif in Background128.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0044.1_Mtf1_1/Jaspar

Match Rank:1
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----TGCACACAAC--
NNTTTGCACACGGCCC

PB0208.1_Zscan4_2/Jaspar

Match Rank:2
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---TGCACACAAC---
CGAAGCACACAAAATA

Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:3
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---TGCACACAAC--
ATTTGCATACAATGG

PB0104.1_Zscan4_1/Jaspar

Match Rank:4
Score:0.63
Offset:-6
Orientation:forward strand
Alignment:------TGCACACAAC-
TACATGTGCACATAAAA

MA0027.1_En1/Jaspar

Match Rank:5
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TGCACACAAC--
-GANCACTACTT

MA0133.1_BRCA1/Jaspar

Match Rank:6
Score:0.61
Offset:5
Orientation:forward strand
Alignment:TGCACACAAC--
-----ACAACAC

Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:7
Score:0.61
Offset:-7
Orientation:forward strand
Alignment:-------TGCACACAAC
NNNVCTGWGYAAACASN

PB0130.1_Gm397_2/Jaspar

Match Rank:8
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---TGCACACAAC---
AGCGGCACACACGCAA

PB0120.1_Foxj1_2/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TGCACACAAC-----
ATGTCACAACAACAC

PB0168.1_Sox14_2/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TGCACACAAC-----
CTCACACAATGGCGC