Information for motif13


Reverse Opposite:

p-value:1e-11
log p-value:-2.724e+01
Information Content per bp:1.742
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif32.56%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets170.1 +/- 81.5bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.1
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0146.2_Zfx/Jaspar

Match Rank:1
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TCAGGCCGGC-----
-CAGGCCNNGGCCNN

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TCAGGCCGGC
CNAGGCCT--

ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:3
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TCAGGCCGGC
CTAGGCCT--

Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:4
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TCAGGCCGGC-----
SCAGYCADGCATGAC

POL006.1_BREu/Jaspar

Match Rank:5
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:TCAGGCCGGC-
---GGCGCGCT

PB0029.1_Hic1_1/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TCAGGCCGGC-----
NGTAGGTTGGCATNNN

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:TCAGGCCGGC
-CACGCA---

MA0112.2_ESR1/Jaspar

Match Rank:8
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---TCAGGCCGGC-------
AGGTCAGGGTGACCTGGNNN

MA0524.1_TFAP2C/Jaspar

Match Rank:9
Score:0.56
Offset:-7
Orientation:forward strand
Alignment:-------TCAGGCCGGC
CATGGCCCCAGGGCA--

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-TCAGGCCGGC
CACAGN-----