| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
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| 1 |  | PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer | 1e-5 | -1.319e+01 | 0.0005 | 16.0 | 37.21% | 4.0 | 9.96% | motif file (matrix) |
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| 2 |  | ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer | 1e-4 | -1.150e+01 | 0.0012 | 8.0 | 18.60% | 0.0 | 0.00% | motif file (matrix) |
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| 3 |  | TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer | 1e-3 | -7.305e+00 | 0.0551 | 6.0 | 13.95% | 0.5 | 1.35% | motif file (matrix) |
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| 4 |  | NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer | 1e-2 | -5.505e+00 | 0.2501 | 9.0 | 20.93% | 3.9 | 9.74% | motif file (matrix) |
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| 5 |  | BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-2 | -5.457e+00 | 0.2501 | 5.0 | 11.63% | 0.0 | 0.00% | motif file (matrix) |
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| 6 |  | CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer | 1e-2 | -5.457e+00 | 0.2501 | 5.0 | 11.63% | 0.0 | 0.00% | motif file (matrix) |
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| 7 |  | EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer | 1e-2 | -5.457e+00 | 0.2501 | 5.0 | 11.63% | 0.5 | 1.20% | motif file (matrix) |
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| 8 |  | Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer | 1e-2 | -5.457e+00 | 0.2501 | 5.0 | 11.63% | 1.7 | 4.32% | motif file (matrix) |
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| 9 |  | NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer | 1e-2 | -5.457e+00 | 0.2501 | 5.0 | 11.63% | 1.2 | 3.05% | motif file (matrix) |
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| 10 |  | Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer | 1e-2 | -5.269e+00 | 0.2501 | 7.0 | 16.28% | 2.4 | 5.99% | motif file (matrix) |
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| 11 |  | SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer | 1e-2 | -5.269e+00 | 0.2501 | 7.0 | 16.28% | 2.4 | 5.95% | motif file (matrix) |
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