Information for motif27


Reverse Opposite:

p-value:1e-6
log p-value:-1.395e+01
Information Content per bp:1.715
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif27.91%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif5.73%
Average Position of motif in Targets165.7 +/- 75.8bp
Average Position of motif in Background169.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.36
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL007.1_BREd/Jaspar

Match Rank:1
Score:0.68
Offset:2
Orientation:forward strand
Alignment:SMGTGTTT-
--GTTTGTT

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:2
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--SMGTGTTT
TTAAGTGCTT

MA0157.1_FOXO3/Jaspar

Match Rank:3
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:SMGTGTTT---
---TGTTTACA

PB0130.1_Gm397_2/Jaspar

Match Rank:4
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--SMGTGTTT------
NNGCGTGTGTGCNGCN

PB0195.1_Zbtb3_2/Jaspar

Match Rank:5
Score:0.66
Offset:-7
Orientation:reverse strand
Alignment:-------SMGTGTTT-
NNNNTGCCAGTGATTG

MF0005.1_Forkhead_class/Jaspar

Match Rank:6
Score:0.65
Offset:3
Orientation:forward strand
Alignment:SMGTGTTT----
---TGTTTATTT

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--SMGTGTTT
TTGAGTGSTT

MA0133.1_BRCA1/Jaspar

Match Rank:8
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:SMGTGTTT-
--GTGTTGN

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:9
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-SMGTGTTT
TGCGTG---

Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer

Match Rank:10
Score:0.65
Offset:2
Orientation:forward strand
Alignment:SMGTGTTT--
--CTGTTTAC