Information for motif30


Reverse Opposite:

p-value:1e-5
log p-value:-1.183e+01
Information Content per bp:1.709
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif39.53%
Number of Background Sequences with motif5.5
Percentage of Background Sequences with motif13.62%
Average Position of motif in Targets166.4 +/- 86.8bp
Average Position of motif in Background88.4 +/- 58.5bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL002.1_INR/Jaspar

Match Rank:1
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GGAGGCTGKD
-NNNANTGA-

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.64
Offset:4
Orientation:forward strand
Alignment:GGAGGCTGKD
----GCTGTG

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:GGAGGCTGKD
---NGCTN--

PB0151.1_Myf6_2/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GGAGGCTGKD---
GGNGCGNCTGTTNNN

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GGAGGCTGKD
-TWGTCTGV-

PH0158.1_Rhox11_2/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GGAGGCTGKD------
AGGACGCTGTAAAGGGA

PH0157.1_Rhox11_1/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GGAGGCTGKD------
AAGACGCTGTAAAGCGA

MA0516.1_SP2/Jaspar

Match Rank:8
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----GGAGGCTGKD-
GGGNGGGGGCGGGGC

PB0097.1_Zfp281_1/Jaspar

Match Rank:9
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GGAGGCTGKD--
GGGGGGGGGGGGGGA

PB0203.1_Zfp691_2/Jaspar

Match Rank:10
Score:0.57
Offset:-6
Orientation:reverse strand
Alignment:------GGAGGCTGKD-
NTNNNAGGAGTCTCNTN