Information for motif20


Reverse Opposite:

p-value:1e-7
log p-value:-1.824e+01
Information Content per bp:1.911
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif32.56%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif6.84%
Average Position of motif in Targets143.6 +/- 89.9bp
Average Position of motif in Background133.1 +/- 36.4bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.38
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-CTATTGGA-
CCGATTGGCT

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:2
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CTATTGGA
CTAATKGV

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CTATTGGA----
TGATTGGCTANN

MA0161.1_NFIC/Jaspar

Match Rank:4
Score:0.65
Offset:3
Orientation:forward strand
Alignment:CTATTGGA-
---TTGGCA

MA0130.1_ZNF354C/Jaspar

Match Rank:5
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CTATTGGA-
---GTGGAT

MA0139.1_CTCF/Jaspar

Match Rank:6
Score:0.61
Offset:-9
Orientation:reverse strand
Alignment:---------CTATTGGA--
TAGCGCCCCCTGGTGGCCA

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer

Match Rank:7
Score:0.60
Offset:-10
Orientation:forward strand
Alignment:----------CTATTGGA--
ANAGTGCCACCTGGTGGCCA

MA0077.1_SOX9/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CTATTGGA-
CCATTGTTC

MA0502.1_NFYB/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CTATTGGA------
CTGATTGGTCNATTT

PB0051.1_Osr2_1/Jaspar

Match Rank:10
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----CTATTGGA---
CNNNGCTACTGTANNN