Information for motif15


Reverse Opposite:

p-value:1e-10
log p-value:-2.434e+01
Information Content per bp:1.816
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif30.23%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif2.19%
Average Position of motif in Targets189.3 +/- 69.0bp
Average Position of motif in Background23.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.38
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AGGCTAAG
TWGTCTGV-

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:2
Score:0.60
Offset:3
Orientation:forward strand
Alignment:AGGCTAAG---
---CTAATKGV

MA0109.1_Hltf/Jaspar

Match Rank:3
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AGGCTAAG---
-NNATAAGGNN

MA0124.1_NKX3-1/Jaspar

Match Rank:4
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:AGGCTAAG---
----TAAGTAT

MA0132.1_Pdx1/Jaspar

Match Rank:5
Score:0.57
Offset:3
Orientation:forward strand
Alignment:AGGCTAAG-
---CTAATT

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:6
Score:0.54
Offset:2
Orientation:forward strand
Alignment:AGGCTAAG--
--GCTAATCC

PB0166.1_Sox12_2/Jaspar

Match Rank:7
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----AGGCTAAG----
AAACAGACAAAGGAAT

MA0467.1_Crx/Jaspar

Match Rank:8
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---AGGCTAAG
AAGAGGATTAG

Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer

Match Rank:9
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:AGGCTAAG--
NAGATAAGNN

PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---AGGCTAAG-
GAAAGTGAAAGT