Information for motif2


Reverse Opposite:

p-value:1e-15
log p-value:-3.657e+01
Information Content per bp:1.661
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif39.53%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif4.23%
Average Position of motif in Targets152.8 +/- 72.7bp
Average Position of motif in Background80.9 +/- 74.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:1
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:AGAGCAGCTTTC
NNAGCAGCTGCT

Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer

Match Rank:2
Score:0.68
Offset:1
Orientation:forward strand
Alignment:AGAGCAGCTTTC
-BAACAGCTGT-

Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:AGAGCAGCTTTC
-CAGCAGCTGN-

MA0521.1_Tcf12/Jaspar

Match Rank:4
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:AGAGCAGCTTTC
-NNGCAGCTGTT

MA0500.1_Myog/Jaspar

Match Rank:5
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:AGAGCAGCTTTC
-NNGCAGCTGTC

SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:6
Score:0.67
Offset:2
Orientation:forward strand
Alignment:AGAGCAGCTTTC
--ANCAGCTG--

MA0499.1_Myod1/Jaspar

Match Rank:7
Score:0.67
Offset:2
Orientation:forward strand
Alignment:AGAGCAGCTTTC---
--TGCAGCTGTCCCT

MA0522.1_Tcf3/Jaspar

Match Rank:8
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:AGAGCAGCTTTC
-NTGCAGCTGTG

PB0003.1_Ascl2_1/Jaspar

Match Rank:9
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--AGAGCAGCTTTC---
NNNNAGCAGCTGCTGAN

PB0047.1_Myf6_1/Jaspar

Match Rank:10
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AGAGCAGCTTTC--
GAAGAACAGGTGTCCG