Information for motif12


Reverse Opposite:

p-value:1e-12
log p-value:-2.800e+01
Information Content per bp:1.767
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif41.86%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif5.86%
Average Position of motif in Targets124.9 +/- 79.6bp
Average Position of motif in Background49.0 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.39
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.73
Offset:1
Orientation:forward strand
Alignment:TSTGCCTG-
-CTGTCTGG

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-TSTGCCTG-
VBSYGTCTGG

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-TSTGCCTG-
CTGTTCCTGG

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---TSTGCCTG------
NNTNNTGTCTGGNNTNG

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.64
Offset:1
Orientation:forward strand
Alignment:TSTGCCTG-
-TWGTCTGV

PB0151.1_Myf6_2/Jaspar

Match Rank:6
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TSTGCCTG-----
GGNGCGNCTGTTNNN

PB0208.1_Zscan4_2/Jaspar

Match Rank:7
Score:0.61
Offset:-7
Orientation:reverse strand
Alignment:-------TSTGCCTG-
NNNNTTGTGTGCTTNN

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TSTGCCTG-
-TTGCCAAG

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.60
Offset:4
Orientation:forward strand
Alignment:TSTGCCTG--
----GCTGTG

PB0195.1_Zbtb3_2/Jaspar

Match Rank:10
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TSTGCCTG------
NNNNTGCCAGTGATTG