Information for motif23


Reverse Opposite:

p-value:1e-6
log p-value:-1.604e+01
Information Content per bp:1.714
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif30.23%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif7.39%
Average Position of motif in Targets144.4 +/- 77.2bp
Average Position of motif in Background111.6 +/- 56.3bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.31
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0014.1_Esrra_1/Jaspar

Match Rank:1
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----CAAGGTCCYG---
TATTCAAGGTCATGCGA

MA0592.1_ESRRA/Jaspar

Match Rank:2
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CAAGGTCCYG
CCAAGGTCACA

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:3
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--CAAGGTCCYG
BTCAAGGTCA--

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:4
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--CAAGGTCCYG
NTCAAGGTCA--

MA0141.2_Esrrb/Jaspar

Match Rank:5
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----CAAGGTCCYG
AGCTCAAGGTCA--

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-CAAGGTCCYG
TCAAGGTCAN-

MA0505.1_Nr5a2/Jaspar

Match Rank:7
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----CAAGGTCCYG
AAGTTCAAGGTCAGC

MA0114.2_HNF4A/Jaspar

Match Rank:8
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----CAAGGTCCYG
NAGNNCAAAGTCCAN

POL011.1_XCPE1/Jaspar

Match Rank:9
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CAAGGTCCYG---
---GGTCCCGCCC

HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:10
Score:0.60
Offset:-7
Orientation:forward strand
Alignment:-------CAAGGTCCYG
CANAGNNCAAAGTCCA-