Information for motif7


Reverse Opposite:

p-value:1e-31
log p-value:-7.197e+01
Information Content per bp:1.701
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif15.79%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif1.25%
Average Position of motif in Targets140.6 +/- 80.3bp
Average Position of motif in Background229.5 +/- 58.1bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

HVH21(HD-KNOTTED)/Hordeum vulgare/AthaMap

Match Rank:1
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CCGTCCAGTC
ANCTGTCACNNN

IME1(MacIsaac)/Yeast

Match Rank:2
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CCGTCCAGTC
CCGCCGAG--

STP1/Literature(Harbison)/Yeast

Match Rank:3
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CCGTCCAGTC--
GCCGCNNNGCCGC

SPL14(SBP)/Arabidopsis thaliana/AthaMap

Match Rank:4
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------CCGTCCAGTC---
TCGCGTCCGTACAGGAGGG

MA0586.1_SPL14/Jaspar

Match Rank:5
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------CCGTCCAGTC---
TCGCGTCCGTACAGGAGGG

MA0320.1_IME1/Jaspar

Match Rank:6
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CCGTCCAGTC
CCGCCGAG--

PB0179.1_Sp100_2/Jaspar

Match Rank:7
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CCGTCCAGTC----
TCCGTCGCTTAAAAG

MA0295.1_FHL1/Jaspar

Match Rank:8
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CCGTCCAGTC
TTTGCGTC-----

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CCGTCCAGTC
CTGTCTGG--

YML081W(MacIsaac)/Yeast

Match Rank:10
Score:0.54
Offset:4
Orientation:forward strand
Alignment:CCGTCCAGTC----
----CCAGTCTGAA