Information for motif29


Reverse Opposite:

p-value:1e-18
log p-value:-4.262e+01
Information Content per bp:1.513
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif11.62%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif1.34%
Average Position of motif in Targets136.1 +/- 91.1bp
Average Position of motif in Background55.4 +/- 2.6bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SWI5/Literature(Harbison)/Yeast

Match Rank:1
Score:0.80
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCTGG
CCAGCA---

CRZ1(MacIsaac)/Yeast

Match Rank:2
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:CAGCCTGG
CAGCCAC-

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--CAGCCTGG
CACAGN----

YML081W(MacIsaac)/Yeast

Match Rank:4
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--CAGCCTGG
TTCAGACTGG

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCTGG
BCAGACWA-

POL002.1_INR/Jaspar

Match Rank:6
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-CAGCCTGG
TCAGTCTT-

MA0267.1_ACE2/Jaspar

Match Rank:7
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--CAGCCTGG
ACCAGCA---

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CAGCCTGG
CAGCC---

SWI5(MacIsaac)/Yeast

Match Rank:9
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---CAGCCTGG
AACCAGCA---

MA0402.1_SWI5/Jaspar

Match Rank:10
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---CAGCCTGG
AACCAGCA---