Information for motif1


Reverse Opposite:

p-value:1e-40
log p-value:-9.383e+01
Information Content per bp:1.736
Number of Target Sequences with motif41.0
Percentage of Target Sequences with motif6.60%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.54%
Average Position of motif in Targets140.6 +/- 80.4bp
Average Position of motif in Background218.2 +/- 31.2bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0139.1_Irf5_2/Jaspar

Match Rank:1
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:ACGCAGTCTCGA----
-NNAATTCTCGNTNAN

MA0414.1_XBP1/Jaspar

Match Rank:2
Score:0.65
Offset:6
Orientation:reverse strand
Alignment:ACGCAGTCTCGA-
------NCTCGAG

PB0138.1_Irf4_2/Jaspar

Match Rank:3
Score:0.64
Offset:1
Orientation:forward strand
Alignment:ACGCAGTCTCGA----
-AGTATTCTCGGTTGC

PB0140.1_Irf6_2/Jaspar

Match Rank:4
Score:0.63
Offset:1
Orientation:forward strand
Alignment:ACGCAGTCTCGA----
-ACCACTCTCGGTCAC

Adf1/dmmpmm(Pollard)/fly

Match Rank:5
Score:0.62
Offset:1
Orientation:forward strand
Alignment:ACGCAGTCTCGA
-CGCGGTCG---

XBP1/Literature(Harbison)/Yeast

Match Rank:6
Score:0.59
Offset:7
Orientation:reverse strand
Alignment:ACGCAGTCTCGA--
-------CTCGAAG

XBP1(MacIsaac)/Yeast

Match Rank:7
Score:0.58
Offset:7
Orientation:forward strand
Alignment:ACGCAGTCTCGA---
-------CTCGAGGA

PB0034.1_Irf4_1/Jaspar

Match Rank:8
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:ACGCAGTCTCGA----
-TNTGGTTTCGATACN

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.55
Offset:3
Orientation:forward strand
Alignment:ACGCAGTCTCGA
---CTGTCTGG-

CRZ1(MacIsaac)/Yeast

Match Rank:10
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:ACGCAGTCTCGA
---CAGCCAC--