Information for motif20


Reverse Opposite:

p-value:1e-20
log p-value:-4.630e+01
Information Content per bp:1.441
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif11.58%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif1.02%
Average Position of motif in Targets150.0 +/- 95.3bp
Average Position of motif in Background265.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:1
Score:0.72
Offset:2
Orientation:forward strand
Alignment:CYGGCGYG
--TGCGTG

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:2
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:CYGGCGYG---
-TTGCGTGCVA

MA0374.1_RSC3/Jaspar

Match Rank:3
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:CYGGCGYG
-NNGCGCG

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:4
Score:0.69
Offset:1
Orientation:forward strand
Alignment:CYGGCGYG-
-GGACGTGC

POL006.1_BREu/Jaspar

Match Rank:5
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:CYGGCGYG--
--GGCGCGCT

brk/dmmpmm(Bergman)/fly

Match Rank:6
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CYGGCGYG
-TGGCGCT

brk/dmmpmm(Papatsenko)/fly

Match Rank:7
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CYGGCGYG
CTGGCGCC

brk/dmmpmm(Pollard)/fly

Match Rank:8
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CYGGCGYG
CTGGCGCC

MA0213.1_brk/Jaspar

Match Rank:9
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CYGGCGYG
CTGGCGCC

MA0329.1_MBP1/Jaspar

Match Rank:10
Score:0.67
Offset:3
Orientation:forward strand
Alignment:CYGGCGYG--
---ACGCGTA