Information for motif12


Reverse Opposite:

p-value:1e-31
log p-value:-7.191e+01
Information Content per bp:1.437
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif5.48%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.50%
Average Position of motif in Targets150.8 +/- 79.4bp
Average Position of motif in Background11.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CHA4(MacIsaac)/Yeast

Match Rank:1
Score:0.76
Offset:2
Orientation:reverse strand
Alignment:CGCTGATCGCAC
--CTCATCGCA-

TOD6?/SacCer-Promoters/Homer

Match Rank:2
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CGCTGATCGCAC
AKCTCATCGC--

MA0350.1_TOD6/Jaspar

Match Rank:3
Score:0.65
Offset:-6
Orientation:forward strand
Alignment:------CGCTGATCGCAC---
AGGCACAGCTCATCGCGTTTT

MA0351.1_DOT6/Jaspar

Match Rank:4
Score:0.65
Offset:-6
Orientation:forward strand
Alignment:------CGCTGATCGCAC---
TTCTGCACCTCATCGCATCCT

ZmHOX2a(2)(HD-HOX)/Zea mays/AthaMap

Match Rank:5
Score:0.63
Offset:3
Orientation:forward strand
Alignment:CGCTGATCGCAC
---TGATCTG--

MA0289.1_DAL80/Jaspar

Match Rank:6
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CGCTGATCGCAC
--CTTATCG---

CDC5(MYB)/Arabidopsis thaliana/AthaMap

Match Rank:7
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CGCTGATCGCAC
CGCGCTGAGCN---

MA0579.1_CDC5/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CGCTGATCGCAC
CGCGCTGAGCN---

MA0434.1_YPR013C/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CGCTGATCGCAC
TGTAGATCA---

byn/dmmpmm(Bigfoot)/fly

Match Rank:10
Score:0.60
Offset:6
Orientation:forward strand
Alignment:CGCTGATCGCAC--
------TCGCACNT