Information for motif4


Reverse Opposite:

p-value:1e-36
log p-value:-8.427e+01
Information Content per bp:1.790
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif6.12%
Number of Background Sequences with motif0.3
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets169.1 +/- 85.6bp
Average Position of motif in Background223.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0360.1_RDR1/Jaspar

Match Rank:1
Score:0.74
Offset:0
Orientation:forward strand
Alignment:CGCGGAACAC
TGCGGAAC--

SWI6/SWI6_YPD/9-SWI4,9-SWI6(Harbison)/Yeast

Match Rank:2
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-CGCGGAACAC
ACGCGAAA---

SWI4(MacIsaac)/Yeast

Match Rank:3
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CGCGGAACAC
ACGCGAAAA--

SWI4/SWI4_YPD/29-SWI4,29-SWI6(Harbison)/Yeast

Match Rank:4
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--CGCGGAACAC
GACGCGAAA---

MA0401.1_SWI4/Jaspar

Match Rank:5
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CGCGGAACAC
ACGCGAAA---

RGT1/Literature(Harbison)/Yeast

Match Rank:6
Score:0.67
Offset:2
Orientation:forward strand
Alignment:CGCGGAACAC
--CGGANNA-

MA0352.1_PDR1/Jaspar

Match Rank:7
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CGCGGAACAC
TCCGCGGA----

MA0261.1_lin-14/Jaspar

Match Rank:8
Score:0.66
Offset:4
Orientation:forward strand
Alignment:CGCGGAACAC
----GAACAC

MA0261.1_lin-14/Jaspar

Match Rank:9
Score:0.66
Offset:4
Orientation:forward strand
Alignment:CGCGGAACAC
----GAACAC

MA0353.1_PDR3/Jaspar

Match Rank:10
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CGCGGAACAC
TCCGCGGA----