Information for motif13


Reverse Opposite:

p-value:1e-25
log p-value:-5.878e+01
Information Content per bp:1.446
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif13.68%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.68%
Average Position of motif in Targets156.0 +/- 88.8bp
Average Position of motif in Background225.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--AGACVGGC
CCAGACRSVB

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--AGACVGGC
CCAGACAG--

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.65
Offset:-7
Orientation:forward strand
Alignment:-------AGACVGGC--
CAAATCCAGACATCACA

YML081W(MacIsaac)/Yeast

Match Rank:4
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---AGACVGGC
TTCAGACTGG-

SPT2/SPT2_YPD/[](Harbison)/Yeast

Match Rank:5
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----AGACVGGC
TTAGAGACAGG-

PB0137.1_Irf3_2/Jaspar

Match Rank:6
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AGACVGGC----
GGAGAAAGGTGCGA

pros/dmmpmm(Bergman)/fly

Match Rank:7
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AGACVGGC
AGNCATG-

SWI6(MacIsaac)/Yeast

Match Rank:8
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AGACVGGC
-GACGCG-

MSN2(MacIsaac)/Yeast

Match Rank:9
Score:0.57
Offset:1
Orientation:forward strand
Alignment:AGACVGGC
-AAGGGGC

MA0431.1_YML081W/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-AGACVGGC
NTGNGGGGN