Information for motif29


Reverse Opposite:

p-value:1e-12
log p-value:-2.912e+01
Information Content per bp:1.797
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif10.61%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.35%
Average Position of motif in Targets201.5 +/- 87.1bp
Average Position of motif in Background94.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.21
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0166.1_Sox12_2/Jaspar

Match Rank:1
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-TTTSTTTGTC-----
ANTCCTTTGTCTNNNN

PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer

Match Rank:2
Score:0.74
Offset:1
Orientation:forward strand
Alignment:TTTSTTTGTC
-KTGTTTGC-

ID1(C2H2(Zn))/Zea mays/AthaMap

Match Rank:3
Score:0.70
Offset:4
Orientation:forward strand
Alignment:TTTSTTTGTC-----
----TTTGTCGTTTT

MA0442.1_SOX10/Jaspar

Match Rank:4
Score:0.68
Offset:3
Orientation:forward strand
Alignment:TTTSTTTGTC
---CTTTGT-

MA0042.1_FOXI1/Jaspar

Match Rank:5
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-TTTSTTTGTC-
GGATGTTTGTTT

PB0071.1_Sox4_1/Jaspar

Match Rank:6
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TTTSTTTGTC-----
TNNTCCTTTGTTCTNNT

MA0514.1_Sox3/Jaspar

Match Rank:7
Score:0.66
Offset:2
Orientation:forward strand
Alignment:TTTSTTTGTC--
--CCTTTGTTTT

br-Z3/dmmpmm(Down)/fly

Match Rank:8
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TTTSTTTGTC
TTTTGTTTAT-

SeqBias: CA-repeat

Match Rank:9
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TTTSTTTGTC
TGTGTGTGTG

PB0061.1_Sox11_1/Jaspar

Match Rank:10
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TTTSTTTGTC-----
NNNTCCTTTGTTCTNNN