Information for motif34


Reverse Opposite:

p-value:1e-11
log p-value:-2.723e+01
Information Content per bp:1.936
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif12.88%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif1.66%
Average Position of motif in Targets142.6 +/- 64.4bp
Average Position of motif in Background146.3 +/- 64.2bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.68
Offset:3
Orientation:forward strand
Alignment:TACTTGTCTGCT
---TWGTCTGV-

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-TACTTGTCTGCT
NNACTTGCCTT--

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.67
Offset:1
Orientation:forward strand
Alignment:TACTTGTCTGCT
-VBSYGTCTGG-

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.66
Offset:3
Orientation:forward strand
Alignment:TACTTGTCTGCT
---CTGTCTGG-

MA0310.1_HAC1/Jaspar

Match Rank:5
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TACTTGTCTGCT
CACGTGTC----

PB0130.1_Gm397_2/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TACTTGTCTGCT---
NNGCGTGTGTGCNGCN

PB0208.1_Zscan4_2/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TACTTGTCTGCT---
NNNNTTGTGTGCTTNN

PB0060.1_Smad3_1/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TACTTGTCTGCT----
NNTNNTGTCTGGNNTNG

ARF1(ABI3/VP1)/Arabidopsis thaliana/AthaMap

Match Rank:9
Score:0.60
Offset:2
Orientation:forward strand
Alignment:TACTTGTCTGCT-
--CTTGTCTCCCA

MA0287.1_CUP2/Jaspar

Match Rank:10
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:TACTTGTCTGCT-
--CATTTCTGCTG