Information for motif6


Reverse Opposite:

p-value:1e-39
log p-value:-9.080e+01
Information Content per bp:1.813
Number of Target Sequences with motif41.0
Percentage of Target Sequences with motif7.54%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.61%
Average Position of motif in Targets142.9 +/- 79.5bp
Average Position of motif in Background51.9 +/- 25.8bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RPN4/RPN4_H2O2Lo/[](Harbison)/Yeast

Match Rank:1
Score:0.93
Offset:0
Orientation:reverse strand
Alignment:GGTGGCAA-
GGTGGCAAA

RPN4(MacIsaac)/Yeast

Match Rank:2
Score:0.91
Offset:-1
Orientation:forward strand
Alignment:-GGTGGCAA--
CGGTGGCAAAA

MA0373.1_RPN4/Jaspar

Match Rank:3
Score:0.77
Offset:0
Orientation:forward strand
Alignment:GGTGGCAA
GGTGGCG-

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.74
Offset:1
Orientation:forward strand
Alignment:GGTGGCAA-
-TTGCCAAG

PB0029.1_Hic1_1/Jaspar

Match Rank:5
Score:0.72
Offset:-5
Orientation:reverse strand
Alignment:-----GGTGGCAA---
NGTAGGTTGGCATNNN

MA0333.1_MET31/Jaspar

Match Rank:6
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--GGTGGCAA
AGTGTGGCG-

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-GGTGGCAA
AGGTGTCA-

MA0365.1_RFX1/Jaspar

Match Rank:8
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:GGTGGCAA--
--TAGCAACC

MA0334.1_MET32/Jaspar

Match Rank:9
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GGTGGCAA
TGTGGCG-

PH0164.1_Six4/Jaspar

Match Rank:10
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----GGTGGCAA----
TNNNNGGTGTCATNTNT