Information for motif1


Reverse Opposite:

p-value:1e-40
log p-value:-9.374e+01
Information Content per bp:1.668
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif15.77%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif1.11%
Average Position of motif in Targets142.3 +/- 86.0bp
Average Position of motif in Background62.2 +/- 23.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0450.1_hkb/Jaspar

Match Rank:1
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TCACGSCGAGWG
TCACGCCCC---

prd/dmmpmm(Noyes)/fly

Match Rank:2
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------TCACGSCGAGWG
AATCCGTCACGCT-----

MA0067.1_Pax2/Jaspar

Match Rank:3
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TCACGSCGAGWG
AGTCACGC------

PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TCACGSCGAGWG-
GTCACGCTCNCTGA

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:5
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:TCACGSCGAGWG
-CACGCA-----

NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TCACGSCGAGWG
GTCACGTGGM---

RTG3/Literature(Harbison)/Yeast

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TCACGSCGAGWG
GGTCAC--------

hkb/dmmpmm(Noyes)/fly

Match Rank:8
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TCACGSCGAGWG
CNTCACGCCCCC--

STB5/STB5_YPD/[](Harbison)/Yeast

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TCACGSCGAGWG
TATAACACCG----

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TCACGSCGAGWG
TBGCACGCAA----