Information for motif22


Reverse Opposite:

p-value:1e-26
log p-value:-6.005e+01
Information Content per bp:1.598
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif4.83%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.36%
Average Position of motif in Targets185.7 +/- 70.9bp
Average Position of motif in Background88.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RGT1/Literature(Harbison)/Yeast

Match Rank:1
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:GATCTTTGTTCG
-----TNNTCCG

PB0071.1_Sox4_1/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GATCTTTGTTCG---
TNNTCCTTTGTTCTNNT

RGT1(MacIsaac)/Yeast

Match Rank:3
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:GATCTTTGTTCG--
----TTTTTCCGGC

OsCBT(CAMTA)/Oryza sativa/AthaMap

Match Rank:4
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GATCTTTGTTCG
TACGCGTTTTGTGCG

PB0061.1_Sox11_1/Jaspar

Match Rank:5
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GATCTTTGTTCG---
NNNTCCTTTGTTCTNNN

MA0514.1_Sox3/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GATCTTTGTTCG
--CCTTTGTTTT

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:7
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GATCTTTGTTCG----
--TTTTTTTTCNNGTN

MA0326.1_MAC1/Jaspar

Match Rank:8
Score:0.57
Offset:4
Orientation:forward strand
Alignment:GATCTTTGTTCG
----TTTGCTCA

MA0294.1_EDS1/Jaspar

Match Rank:9
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GATCTTTGTTCG
---ATTTTTCCG

MAC1/Literature(Harbison)/Yeast

Match Rank:10
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:GATCTTTGTTCG
----TTTGCTC-