Information for motif33


Reverse Opposite:

p-value:1e-15
log p-value:-3.541e+01
Information Content per bp:1.798
Number of Target Sequences with motif31.0
Percentage of Target Sequences with motif16.32%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif2.58%
Average Position of motif in Targets164.5 +/- 93.7bp
Average Position of motif in Background204.9 +/- 47.6bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0133.1_BRCA1/Jaspar

Match Rank:1
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GACAACTC
-ACAACAC

PB0117.1_Eomes_2/Jaspar

Match Rank:2
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----GACAACTC---
NNGGCGACACCTCNNN

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:3
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GACAACTC
RNAACAATGG

Vis/dmmpmm(Noyes_hd)/fly

Match Rank:4
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----GACAACTC
ANNTGACAGN--

Achi/dmmpmm(Noyes_hd)/fly

Match Rank:5
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----GACAACTC
NTTTGACAGC--

MA0252.1_vis/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GACAACTC
TGACAG---

PH0169.1_Tgif1/Jaspar

Match Rank:7
Score:0.63
Offset:-6
Orientation:forward strand
Alignment:------GACAACTC---
GATATTGACAGCTGCGT

ID1(C2H2(Zn))/Zea mays/AthaMap

Match Rank:8
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----GACAACTC
AAAACGACAAA--

PH0140.1_Pknox1/Jaspar

Match Rank:9
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----GACAACTC---
GGATTGACAGGTCNTT

MA0207.1_achi/Jaspar

Match Rank:10
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GACAACTC
TGACAG---