Information for motif21


Reverse Opposite:

p-value:1e-19
log p-value:-4.387e+01
Information Content per bp:1.794
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif9.91%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif1.08%
Average Position of motif in Targets141.6 +/- 97.6bp
Average Position of motif in Background293.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:1
Score:0.87
Offset:-2
Orientation:forward strand
Alignment:--CCACTCAA-
AGCCACTCAAG

z/dmmpmm(SeSiMCMC)/fly

Match Rank:2
Score:0.83
Offset:1
Orientation:reverse strand
Alignment:CCACTCAA
-CACTCAA

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.81
Offset:-2
Orientation:forward strand
Alignment:--CCACTCAA
AASCACTCAA

z/dmmpmm(Pollard)/fly

Match Rank:4
Score:0.81
Offset:-2
Orientation:reverse strand
Alignment:--CCACTCAA
ANTCACTCAA

MA0255.1_z/Jaspar

Match Rank:5
Score:0.81
Offset:-2
Orientation:reverse strand
Alignment:--CCACTCAA
ANTCACTCAA

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:6
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-CCACTCAA-
RSCACTYRAG

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:7
Score:0.78
Offset:-5
Orientation:forward strand
Alignment:-----CCACTCAA----
CTTAACCACTTAAGGAT

z/dmmpmm(Down)/fly

Match Rank:8
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:CCACTCAA
-CACTCA-

z/dmmpmm(Bigfoot)/fly

Match Rank:9
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:CCACTCAA
-CACTCA-

MA0122.1_Nkx3-2/Jaspar

Match Rank:10
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-CCACTCAA
NCCACTTAN