Information for motif9


Reverse Opposite:

p-value:1e-32
log p-value:-7.496e+01
Information Content per bp:1.689
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif5.64%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets156.7 +/- 80.0bp
Average Position of motif in Background271.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0410.1_UGA3/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CCGCGGCAKCCG
CGGCGGGA----

MA0352.1_PDR1/Jaspar

Match Rank:2
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CCGCGGCAKCCG
TCCGCGGA-----

Mad/dmmpmm(Bigfoot)/fly

Match Rank:3
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CCGCGGCAKCCG
-CGCGGCGCCAG

PHD1/PHD1_BUT90/8-SUT1(Harbison)/Yeast

Match Rank:4
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CCGCGGCAKCCG
CCTGCGGC-----

STP1(MacIsaac)/Yeast

Match Rank:5
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CCGCGGCAKCCG
-TGCGGCGC---

MA0394.1_STP1/Jaspar

Match Rank:6
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CCGCGGCAKCCG
-TGCGGCGC---

Adf1/dmmpmm(Bergman)/fly

Match Rank:7
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CCGCGGCAKCCG
NACAGAAGCAGC--

STP4(MacIsaac)/Yeast

Match Rank:8
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CCGCGGCAKCCG-
CGCCGTGTCACGCGC

SeqBias: GCW-triplet

Match Rank:9
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CCGCGGCAKCCG--
--GCAGCAGCAGCA

UME6(MacIsaac)/Yeast

Match Rank:10
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CCGCGGCAKCCG
TCGGCGGCTA---