Information for motif39


Reverse Opposite:

p-value:1e-9
log p-value:-2.245e+01
Information Content per bp:1.690
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif15.15%
Number of Background Sequences with motif4.6
Percentage of Background Sequences with motif2.89%
Average Position of motif in Targets171.3 +/- 83.8bp
Average Position of motif in Background185.1 +/- 28.3bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0170.1_Sox17_2/Jaspar

Match Rank:1
Score:0.66
Offset:-6
Orientation:forward strand
Alignment:------ATWCAYACAATT
GACCACATTCATACAAT-

Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:2
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--ATWCAYACAATT-
ATTTGCATACAATGG

PB0165.1_Sox11_2/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:ATWCAYACAATT--
NNCNNAACAATTNT

PB0177.1_Sox7_2/Jaspar

Match Rank:4
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----ATWCAYACAATT-----
NNCNNNCNCANACAATTAGNAC

PB0168.1_Sox14_2/Jaspar

Match Rank:5
Score:0.62
Offset:1
Orientation:forward strand
Alignment:ATWCAYACAATT----
-CTCACACAATGGCGC

PB0175.1_Sox4_2/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:ATWCAYACAATT-----
TNCNNAACAATTTTTNC

Top2/dmmpmm(Pollard)/fly

Match Rank:7
Score:0.61
Offset:1
Orientation:forward strand
Alignment:ATWCAYACAATT---
-TACATACATATGTA

MA0327.1_MATA1/Jaspar

Match Rank:8
Score:0.61
Offset:4
Orientation:forward strand
Alignment:ATWCAYACAATT
----ACACAAT-

MATA1(MacIsaac)/Yeast

Match Rank:9
Score:0.61
Offset:4
Orientation:forward strand
Alignment:ATWCAYACAATT
----ACACAAT-

p120/dmmpmm(Pollard)/fly

Match Rank:10
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:ATWCAYACAATT-
-AACATTCAATAG