Information for motif12


Reverse Opposite:

p-value:1e-18
log p-value:-4.153e+01
Information Content per bp:1.681
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif13.64%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.63%
Average Position of motif in Targets144.1 +/- 81.6bp
Average Position of motif in Background34.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:1
Score:0.65
Offset:-7
Orientation:forward strand
Alignment:-------ATCMTGCWTCTT-
ACTYKNATTCGTGNTACTTC

MA0385.1_SOK2/Jaspar

Match Rank:2
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:ATCMTGCWTCTT
NNCCTGCAGGT-

MA0295.1_FHL1/Jaspar

Match Rank:3
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:ATCMTGCWTCTT
--TTTGCGTC--

MA0355.1_PHD1/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:ATCMTGCWTCTT
-NGNTGCAGGN-

SOK2/SOK2_BUT14/4-SUT1(Harbison)/Yeast

Match Rank:5
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:ATCMTGCWTCTT
TNCCTGCA----

YAP5(MacIsaac)/Yeast

Match Rank:6
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:ATCMTGCWTCTT
---ATGCTT---

MA0417.1_YAP5/Jaspar

Match Rank:7
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:ATCMTGCWTCTT
---ATGCTT---

Unknown4/Arabidopsis-Promoters/Homer

Match Rank:8
Score:0.59
Offset:3
Orientation:forward strand
Alignment:ATCMTGCWTCTT-
---CKTCKTCTTY

MA0581.1_LEC2/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:ATCMTGCWTCTT
TGCATGCACAT-

grh/dmmpmm(Papatsenko)/fly

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:ATCMTGCWTCTT
TACCTGCT----