Information for motif39


Reverse Opposite:

p-value:1e-15
log p-value:-3.556e+01
Information Content per bp:1.612
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif10.37%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif1.77%
Average Position of motif in Targets171.0 +/- 78.7bp
Average Position of motif in Background106.5 +/- 87.9bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0217.1_caup/Jaspar

Match Rank:1
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:TGTTAKGA
TGTTA---

MA0210.1_ara/Jaspar

Match Rank:2
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:TGTTAKGA
TGTTA---

MA0233.1_mirr/Jaspar

Match Rank:3
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:TGTTAKGA
TGTTT---

PB0121.1_Foxj3_2/Jaspar

Match Rank:4
Score:0.71
Offset:-5
Orientation:reverse strand
Alignment:-----TGTTAKGA----
NNCTTTGTTTTGNTNNN

ara/dmmpmm(Noyes_hd)/fly

Match Rank:5
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--TGTTAKGA
NNTGTTATTN

Mirr/dmmpmm(Noyes_hd)/fly

Match Rank:6
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--TGTTAKGA
NNTGTTTTTT

ZmHOX2a(1)(HD-HOX)/Zea mays/AthaMap

Match Rank:7
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:TGTTAKGA-
--TTAGGAC

PB0119.1_Foxa2_2/Jaspar

Match Rank:8
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----TGTTAKGA--
NCNTTTGTTATTTNN

PB0120.1_Foxj1_2/Jaspar

Match Rank:9
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----TGTTAKGA---
GTNTTGTTGTGANNT

MA0173.1_CG11617/Jaspar

Match Rank:10
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TGTTAKGA
ATGTTAA--