Information for motif27


Reverse Opposite:

p-value:1e-23
log p-value:-5.337e+01
Information Content per bp:1.596
Number of Target Sequences with motif43.0
Percentage of Target Sequences with motif7.90%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif1.29%
Average Position of motif in Targets153.9 +/- 79.8bp
Average Position of motif in Background108.9 +/- 71.0bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

dl/dmmpmm(Down)/fly

Match Rank:1
Score:0.74
Offset:2
Orientation:forward strand
Alignment:GCTGGAATTTTC
--TGGATTTTCC

NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer

Match Rank:2
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:GCTGGAATTTTC
--GGGAATTTCC

HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---GCTGGAATTTTC-----
NNTTCTGGAANNTTCTAGAA

dl/dmmpmm(Bigfoot)/fly

Match Rank:4
Score:0.70
Offset:3
Orientation:forward strand
Alignment:GCTGGAATTTTC--
---GGATTTTCCCC

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GCTGGAATTTTC
NCTGGAATGC--

MA0105.3_NFKB1/Jaspar

Match Rank:6
Score:0.69
Offset:2
Orientation:forward strand
Alignment:GCTGGAATTTTC-
--GGGAATTTCCC

MA0107.1_RELA/Jaspar

Match Rank:7
Score:0.69
Offset:2
Orientation:forward strand
Alignment:GCTGGAATTTTC
--GGGAATTTCC

MA0486.1_HSF1/Jaspar

Match Rank:8
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GCTGGAATTTTC-
CTTCTAGAAGGTTCT

HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer

Match Rank:9
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GCTGGAATTTTC--
TTCTAGAABNTTCTA

dl/dmmpmm(SeSiMCMC)/fly

Match Rank:10
Score:0.67
Offset:3
Orientation:forward strand
Alignment:GCTGGAATTTTC
---GGATTTTCC