Information for motif10


Reverse Opposite:

p-value:1e-29
log p-value:-6.861e+01
Information Content per bp:1.677
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif15.26%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.82%
Average Position of motif in Targets148.1 +/- 82.1bp
Average Position of motif in Background233.8 +/- 45.8bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0581.1_LEC2/Jaspar

Match Rank:1
Score:0.84
Offset:-1
Orientation:reverse strand
Alignment:-TGTGCATGCA
ATGTGCATGNN

MA0564.1_ABI3/Jaspar

Match Rank:2
Score:0.82
Offset:2
Orientation:reverse strand
Alignment:TGTGCATGCA-
--TGCATGCAG

MA0565.1_FUS3/Jaspar

Match Rank:3
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:TGTGCATGCA
-GCGCATGCG

AtLEC2(ABI3/VP1)/Arabidopsis thaliana/AthaMap

Match Rank:4
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:TGTGCATGCA
TTTGCATGGA

nub/dmmpmm(Pollard)/fly

Match Rank:5
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-TGTGCATGCA
TTATGCAAGC-

MA0385.1_SOK2/Jaspar

Match Rank:6
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:TGTGCATGCA---
--NNCCTGCAGGT

NRF1/Promoter/Homer

Match Rank:7
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TGTGCATGCA-
GTGCGCATGCGC

PB0104.1_Zscan4_1/Jaspar

Match Rank:8
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----TGTGCATGCA---
TACATGTGCACATAAAA

NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TGTGCATGCA-
CTGCGCATGCGC

SOK2(MacIsaac)/Yeast

Match Rank:10
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TGTGCATGCA
-TTGCCTGC-