Information for motif28


Reverse Opposite:

p-value:1e-18
log p-value:-4.262e+01
Information Content per bp:1.497
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif11.62%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif1.20%
Average Position of motif in Targets183.0 +/- 79.2bp
Average Position of motif in Background109.4 +/- 90.1bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0377.1_SFL1/Jaspar

Match Rank:1
Score:0.63
Offset:-8
Orientation:forward strand
Alignment:--------CGAAGAAWYNAA-
TAGAGAATAGAAGAAATAAAA

POL008.1_DCE_S_I/Jaspar

Match Rank:2
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CGAAGAAWYNAA
NGAAGC------

T1ISRE(IRF)/Ifnb-Exp/Homer

Match Rank:3
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CGAAGAAWYNAA---
---AGAAACGAAAGT

Unknown4/Arabidopsis-Promoters/Homer

Match Rank:4
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CGAAGAAWYNAA
RAAGAMGAMG----

MA0388.1_SPT23/Jaspar

Match Rank:5
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CGAAGAAWYNAA
----GAAATCAA

SPT23/SPT23_YPD/[](Harbison)/Yeast

Match Rank:6
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CGAAGAAWYNAA
----GAAATCAA

SPT23(MacIsaac)/Yeast

Match Rank:7
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CGAAGAAWYNAA
----GAAATCAA

MA0336.1_MGA1/Jaspar

Match Rank:8
Score:0.53
Offset:-8
Orientation:forward strand
Alignment:--------CGAAGAAWYNAA-
AGGACTATAGAACACTCTAAA

PH0043.1_Hmx3/Jaspar

Match Rank:9
Score:0.52
Offset:0
Orientation:forward strand
Alignment:CGAAGAAWYNAA-----
ACAAGCAATTAAAGAAT

PH0042.1_Hmx2/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:forward strand
Alignment:CGAAGAAWYNAA-----
ACAAGCAATTAAAGAAT