Information for motif38


Reverse Opposite:

p-value:1e-15
log p-value:-3.556e+01
Information Content per bp:1.659
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif10.37%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif1.69%
Average Position of motif in Targets175.9 +/- 80.0bp
Average Position of motif in Background184.0 +/- 38.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.28
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0127.1_PEND/Jaspar

Match Rank:1
Score:0.74
Offset:0
Orientation:forward strand
Alignment:ATTTCTCATT
ACTTCTTATT

MA0390.1_STB3/Jaspar

Match Rank:2
Score:0.68
Offset:-7
Orientation:forward strand
Alignment:-------ATTTCTCATT----
GTCCAAAATTTTTCACTCTGG

Su(H)/dmmpmm(Bergman)/fly

Match Rank:3
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:ATTTCTCATT
--CTCCCAC-

LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer

Match Rank:4
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-ATTTCTCATT
CATYAATCAT-

NDD1(MacIsaac)/Yeast

Match Rank:5
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:ATTTCTCATT-
-TTTCCCCTTT

ems/dmmpmm(Pollard)/fly

Match Rank:6
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:ATTTCTCATT-
---TGTCATNA

PB0148.1_Mtf1_2/Jaspar

Match Rank:7
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---ATTTCTCATT-
NNTTTTTCTTATNT

hb/dmmpmm(Bergman)/fly

Match Rank:8
Score:0.64
Offset:1
Orientation:forward strand
Alignment:ATTTCTCATT-
-TTTTTTATGC

sd/dmmpmm(Bergman)/fly

Match Rank:9
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---ATTTCTCATT
AANATGTNT----

RLR1?/SacCer-Promoters/Homer

Match Rank:10
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-ATTTCTCATT-
WTTTTCYYTTTT