Information for motif18


Reverse Opposite:

p-value:1e-28
log p-value:-6.591e+01
Information Content per bp:1.779
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif5.15%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets140.2 +/- 82.7bp
Average Position of motif in Background239.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.76
Offset:2
Orientation:forward strand
Alignment:ACGCTCCGGC
--GCTCCG--

FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer

Match Rank:2
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---ACGCTCCGGC
HHCACGCGCBTN-

Deaf1/dmmpmm(Down)/fly

Match Rank:3
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-ACGCTCCGGC-
AGCGCTTCGGGC

YDR520C(MacIsaac)/Yeast

Match Rank:4
Score:0.65
Offset:2
Orientation:forward strand
Alignment:ACGCTCCGGC---
--TCTCCGGCGGA

MA0280.1_CAT8/Jaspar

Match Rank:5
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:ACGCTCCGGC
---NTCCGG-

hkb/dmmpmm(Papatsenko)/fly

Match Rank:6
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--ACGCTCCGGC
CAACGCCCA---

MA0374.1_RSC3/Jaspar

Match Rank:7
Score:0.63
Offset:1
Orientation:forward strand
Alignment:ACGCTCCGGC
-CGCGCGG--

Mad/dmmpmm(SeSiMCMC)/fly

Match Rank:8
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:ACGCTCCGGC-
--GCGGCGACA

Mad/dmmpmm(Pollard)/fly

Match Rank:9
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:ACGCTCCGGC--
--GCGNCGCCNG

MA0450.1_hkb/Jaspar

Match Rank:10
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--ACGCTCCGGC
TCACGCCCC---