Information for motif2


Reverse Opposite:

p-value:1e-39
log p-value:-8.999e+01
Information Content per bp:1.504
Number of Target Sequences with motif43.0
Percentage of Target Sequences with motif22.63%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif1.61%
Average Position of motif in Targets139.0 +/- 81.3bp
Average Position of motif in Background82.8 +/- 36.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR/Cell-Cycle-Exp/Homer

Match Rank:1
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TTGAAAACGH
TTTGAAACCG-

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TTGAAAACGH
ACTGAAACCA-

MA0277.1_AZF1/Jaspar

Match Rank:3
Score:0.64
Offset:3
Orientation:forward strand
Alignment:TTGAAAACGH--
---AAAAAGAAA

prd/dmmpmm(Down)/fly

Match Rank:4
Score:0.63
Offset:3
Orientation:forward strand
Alignment:TTGAAAACGH
---AAACTG-

PH0044.1_Homez/Jaspar

Match Rank:5
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TTGAAAACGH------
NNTAAAAACGATGTTNT

MA0393.1_STE12/Jaspar

Match Rank:6
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TTGAAAACGH
-TGAAACA--

hb/dmmpmm(Pollard)/fly

Match Rank:7
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TTGAAAACGH
ATAAAAAA--

MA0390.1_STB3/Jaspar

Match Rank:8
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----TTGAAAACGH------
NNNNAGTGAAAAATTTTNGAC

hb/dmmpmm(Bigfoot)/fly

Match Rank:9
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TTGAAAACGH
CATAAAAAA--

CST6(MacIsaac)/Yeast

Match Rank:10
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:TTGAAAACGH-
---NAAATGCA