Information for motif6


Reverse Opposite:

p-value:1e-32
log p-value:-7.537e+01
Information Content per bp:1.645
Number of Target Sequences with motif31.0
Percentage of Target Sequences with motif16.32%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif1.02%
Average Position of motif in Targets153.1 +/- 97.3bp
Average Position of motif in Background259.7 +/- 0.8bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0411.1_UPC2/Jaspar

Match Rank:1
Score:0.55
Offset:6
Orientation:forward strand
Alignment:AGCAGAGAGACG-
------TATACGA

Trl/dmmpmm(Pollard)/fly

Match Rank:2
Score:0.55
Offset:2
Orientation:forward strand
Alignment:AGCAGAGAGACG
--GAGAGAGCAA

MA0205.1_Trl/Jaspar

Match Rank:3
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:AGCAGAGAGACG
--GAGAGAGCAA

MA0543.1_EOR-1/Jaspar

Match Rank:4
Score:0.53
Offset:3
Orientation:forward strand
Alignment:AGCAGAGAGACG------
---AGAGAGACGCAGAGA

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:5
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-AGCAGAGAGACG----
CTACTTGGATACGGAAT

Unknown4/Arabidopsis-Promoters/Homer

Match Rank:6
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:AGCAGAGAGACG---
-----RAAGAMGAMG

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-AGCAGAGAGACG
CGGAAGTGAAAC-

GAGA-repeat/Arabidopsis-Promoters/Homer

Match Rank:8
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:AGCAGAGAGACG
-RGAGAGAGAG-

T1ISRE(IRF)/Ifnb-Exp/Homer

Match Rank:9
Score:0.51
Offset:5
Orientation:reverse strand
Alignment:AGCAGAGAGACG-----
-----AGAAACGAAAGT

YOX1/Literature(Harbison)/Yeast

Match Rank:10
Score:0.51
Offset:0
Orientation:forward strand
Alignment:AGCAGAGAGACG
ACAATANTGAAA