Information for motif25


Reverse Opposite:

p-value:1e-21
log p-value:-4.869e+01
Information Content per bp:1.810
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif9.96%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.74%
Average Position of motif in Targets167.9 +/- 94.3bp
Average Position of motif in Background43.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PCF5(TCP)/Oryza sativa/AthaMap

Match Rank:1
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-TGGTCCCT-
GTGGTCCCGC

NRG1/NRG1_H2O2Hi/[](Harbison)/Yeast

Match Rank:2
Score:0.72
Offset:1
Orientation:forward strand
Alignment:TGGTCCCT
-GGACCCT

MA0347.1_NRG1/Jaspar

Match Rank:3
Score:0.71
Offset:-5
Orientation:reverse strand
Alignment:-----TGGTCCCT-------
NGCNNTGGACCCTGATNNNG

NRG1(MacIsaac)/Yeast

Match Rank:4
Score:0.69
Offset:1
Orientation:forward strand
Alignment:TGGTCCCT
-GGACCCT

MA0587.1_TCP16/Jaspar

Match Rank:5
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-TGGTCCCT-
GTGGACCCGG

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---TGGTCCCT
CNGTCCTCCC-

PB0200.1_Zfp187_2/Jaspar

Match Rank:7
Score:0.66
Offset:-6
Orientation:forward strand
Alignment:------TGGTCCCT--
GAGCCCTTGTCCCTAA

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:8
Score:0.65
Offset:-7
Orientation:reverse strand
Alignment:-------TGGTCCCT--
NNANTGGTGGTCTTNNN

ttk/dmmpmm(Bigfoot)/fly

Match Rank:9
Score:0.65
Offset:1
Orientation:forward strand
Alignment:TGGTCCCT
-GGTCCTG

RTG3/Literature(Harbison)/Yeast

Match Rank:10
Score:0.65
Offset:1
Orientation:forward strand
Alignment:TGGTCCCT
-GGTCAC-