Information for motif23


Reverse Opposite:

p-value:1e-26
log p-value:-6.005e+01
Information Content per bp:1.925
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif4.83%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.54%
Average Position of motif in Targets171.3 +/- 78.1bp
Average Position of motif in Background74.1 +/- 58.3bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0597.1_THAP1/Jaspar

Match Rank:1
Score:0.75
Offset:-3
Orientation:reverse strand
Alignment:---GGGCAGAG
TNNGGGCAG--

RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:2
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--GGGCAGAG----
TAGGGCAAAGGTCA

MA0065.2_PPARG::RXRA/Jaspar

Match Rank:3
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---GGGCAGAG----
GTAGGGCAAAGGTCA

PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:4
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--GGGCAGAG----
TGGGGCAAAGGTCA

PB0133.1_Hic1_2/Jaspar

Match Rank:5
Score:0.67
Offset:-6
Orientation:reverse strand
Alignment:------GGGCAGAG--
NNNNTTGGGCACNNCN

POL003.1_GC-box/Jaspar

Match Rank:6
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---GGGCAGAG---
AGGGGGCGGGGCTG

MA0504.1_NR2C2/Jaspar

Match Rank:7
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---GGGCAGAG----
AGGGGTCAGAGGTCA

MA0283.1_CHA4/Jaspar

Match Rank:8
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GGGCAGAG-
-GGCGGAGA

TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:9
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GGGCAGAG----
GAGGTCAAAGGTCA

PB0202.1_Zfp410_2/Jaspar

Match Rank:10
Score:0.62
Offset:-6
Orientation:reverse strand
Alignment:------GGGCAGAG---
NNTNNGGGGCGGNGNGN