Information for motif37


Reverse Opposite:

p-value:1e-10
log p-value:-2.479e+01
Information Content per bp:1.792
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif12.12%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif1.83%
Average Position of motif in Targets179.0 +/- 78.1bp
Average Position of motif in Background11.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

AGP1(GATA)/Nicotiana tabacum/AthaMap

Match Rank:1
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:TTAGACCT--
NTAGATCTGA

MA0301.1_GAT3/Jaspar

Match Rank:2
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-TTAGACCT
NNTAGATCT

MA0302.1_GAT4/Jaspar

Match Rank:3
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-TTAGACCT--
NNTAGATCTNN

MA0389.1_SRD1/Jaspar

Match Rank:4
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TTAGACCT
GTAGATCT

PB0194.1_Zbtb12_2/Jaspar

Match Rank:5
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----TTAGACCT--
TATCATTAGAACGCT

MA0071.1_RORA_1/Jaspar

Match Rank:6
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:TTAGACCT----
--TGACCTTGAT

MA0459.1_tll/Jaspar

Match Rank:7
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TTAGACCT--
TTTGACTTTT

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.63
Offset:1
Orientation:forward strand
Alignment:TTAGACCT---
-NTGACCTTGA

MA0293.1_ECM23/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TTAGACCT--
NNNAGATCTNN

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:10
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:TTAGACCT
--TGACCT