Information for motif25


Reverse Opposite:

p-value:1e-18
log p-value:-4.329e+01
Information Content per bp:1.383
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif11.05%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif1.23%
Average Position of motif in Targets141.8 +/- 80.9bp
Average Position of motif in Background121.8 +/- 47.0bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0020.1_Dof2/Jaspar

Match Rank:1
Score:0.76
Offset:2
Orientation:reverse strand
Alignment:AAAGCTTTGCAA
--NGCTTT----

MA0053.1_MNB1A/Jaspar

Match Rank:2
Score:0.76
Offset:3
Orientation:reverse strand
Alignment:AAAGCTTTGCAA
---GCTTT----

MA0064.1_PBF/Jaspar

Match Rank:3
Score:0.76
Offset:3
Orientation:reverse strand
Alignment:AAAGCTTTGCAA
---GCTTT----

MA0164.1_Nr2e3/Jaspar

Match Rank:4
Score:0.72
Offset:0
Orientation:forward strand
Alignment:AAAGCTTTGCAA
CAAGCTT-----

MA0021.1_Dof3/Jaspar

Match Rank:5
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:AAAGCTTTGCAA
--CGCTTT----

slbo/dmmpmm(Pollard)/fly

Match Rank:6
Score:0.68
Offset:5
Orientation:reverse strand
Alignment:AAAGCTTTGCAA-
-----TTTGCAAT

MA0244.1_slbo/Jaspar

Match Rank:7
Score:0.68
Offset:5
Orientation:reverse strand
Alignment:AAAGCTTTGCAA-
-----TTTGCAAT

pan/dmmpmm(Papatsenko)/fly

Match Rank:8
Score:0.67
Offset:4
Orientation:forward strand
Alignment:AAAGCTTTGCAA
----CTTTGAT-

DOF2(C2C2(Zn) Dof)/Zea mays/AthaMap

Match Rank:9
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:AAAGCTTTGCAA
-NNGCTTTANNN

RIM101/Literature(Harbison)/Yeast

Match Rank:10
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:AAAGCTTTGCAA
----CTTGGCA-