Information for motif40


Reverse Opposite:

p-value:1e-13
log p-value:-3.184e+01
Information Content per bp:1.677
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif8.95%
Number of Background Sequences with motif0.4
Percentage of Background Sequences with motif0.24%
Average Position of motif in Targets132.5 +/- 81.2bp
Average Position of motif in Background294.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0129.1_Glis2_2/Jaspar

Match Rank:1
Score:0.83
Offset:-1
Orientation:forward strand
Alignment:-GTATTAATAAAA-
AATATTAATAAAGA

zen/dmmpmm(Down)/fly

Match Rank:2
Score:0.77
Offset:0
Orientation:forward strand
Alignment:GTATTAATAAAA
ATAAAAATAAA-

MA0174.1_CG42234/Jaspar

Match Rank:3
Score:0.75
Offset:4
Orientation:reverse strand
Alignment:GTATTAATAAAA
----TAATAAA-

CG12361/dmmpmm(Noyes_hd)/fly

Match Rank:4
Score:0.75
Offset:3
Orientation:reverse strand
Alignment:GTATTAATAAAA-
---GTAATAAAAN

H2/dmmpmm(Noyes_hd)/fly

Match Rank:5
Score:0.75
Offset:3
Orientation:reverse strand
Alignment:GTATTAATAAAA-
---TTAATTAANN

cad/dmmpmm(Noyes_hd)/fly

Match Rank:6
Score:0.74
Offset:3
Orientation:reverse strand
Alignment:GTATTAATAAAA-
---NTAATAAAAN

PH0095.1_Lhx5/Jaspar

Match Rank:7
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-GTATTAATAAAA----
CGAATTAATTAAATACT

PH0078.1_Hoxd13/Jaspar

Match Rank:8
Score:0.74
Offset:0
Orientation:forward strand
Alignment:GTATTAATAAAA----
CTACCAATAAAATTCT

PB0001.1_Arid3a_1/Jaspar

Match Rank:9
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--GTATTAATAAAA---
NNNTTTTAATTAANNNN

cad/dmmpmm(Noyes)/fly

Match Rank:10
Score:0.74
Offset:3
Orientation:forward strand
Alignment:GTATTAATAAAA
---NTAATAAA-