Information for motif3


Reverse Opposite:

p-value:1e-37
log p-value:-8.578e+01
Information Content per bp:1.673
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif17.89%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif1.27%
Average Position of motif in Targets151.8 +/- 87.0bp
Average Position of motif in Background212.6 +/- 70.2bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0394.1_STP1/Jaspar

Match Rank:1
Score:0.64
Offset:5
Orientation:forward strand
Alignment:CDCGTCGCGRCG-
-----TGCGGCGC

STP1(MacIsaac)/Yeast

Match Rank:2
Score:0.64
Offset:5
Orientation:forward strand
Alignment:CDCGTCGCGRCG-
-----TGCGGCGC

Mad/dmmpmm(Bigfoot)/fly

Match Rank:3
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CDCGTCGCGRCG
-CTGGCGCCGCG

Mad/dmmpmm(SeSiMCMC)/fly

Match Rank:4
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CDCGTCGCGRCG
--TGTCGCCGC-

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CDCGTCGCGRCG--
CCGCATAGCAACGGA

PIF3(1)(bHLH)/Arabidopsis thaliana/AthaMap

Match Rank:6
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------CDCGTCGCGRCG
GTGGGACACGTGGCGACT

SWI6(MacIsaac)/Yeast

Match Rank:7
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CDCGTCGCGRCG
CGCGTC------

E-box/Arabidopsis-Promoters/Homer

Match Rank:8
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CDCGTCGCGRCG
CACGTGGC----

ABF1(bZIP)/Arabidopsis thaliana/AthaMap

Match Rank:9
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CDCGTCGCGRCG
ACACGTGGC----

MBP1(MacIsaac)/Yeast

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CDCGTCGCGRCG
ACGCGTC------