Information for motif43


Reverse Opposite:

p-value:1e-7
log p-value:-1.789e+01
Information Content per bp:1.717
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif9.85%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif1.80%
Average Position of motif in Targets133.6 +/- 83.2bp
Average Position of motif in Background32.1 +/- 15.2bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

STP1/Literature(Harbison)/Yeast

Match Rank:1
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CGACCGGTCGAC
ACGGCNNNACGGC

SeqBias: CG-repeat

Match Rank:2
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CGACCGGTCGAC
CGCGCGCGCG--

MA0361.1_RDS1/Jaspar

Match Rank:3
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CGACCGGTCGAC
NCGGCCG------

RDS1(MacIsaac)/Yeast

Match Rank:4
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CGACCGGTCGAC
CGGCCG------

Adf1/dmmpmm(Pollard)/fly

Match Rank:5
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CGACCGGTCGAC
CGACCGCG----

PB0179.1_Sp100_2/Jaspar

Match Rank:6
Score:0.53
Offset:-8
Orientation:reverse strand
Alignment:--------CGACCGGTCGAC
NNTTTANNCGACGNA-----

SKN7/SKN7_H2O2Lo/[](Harbison)/Yeast

Match Rank:7
Score:0.52
Offset:1
Orientation:forward strand
Alignment:CGACCGGTCGAC
-GCCNGGGCC--

Mad/dmmpmm(SeSiMCMC)/fly

Match Rank:8
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----CGACCGGTCGAC
GCGGCGACA-------

MA0429.1_YLL054C/Jaspar

Match Rank:9
Score:0.52
Offset:4
Orientation:forward strand
Alignment:CGACCGGTCGAC
----CGGCCGA-

Mad/dmmpmm(Bigfoot)/fly

Match Rank:10
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-CGACCGGTCGAC
CTGGCGCCGCG--