Information for motif43


Reverse Opposite:

p-value:1e-10
log p-value:-2.429e+01
Information Content per bp:1.697
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif6.60%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.94%
Average Position of motif in Targets150.8 +/- 85.6bp
Average Position of motif in Background233.4 +/- 41.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.43
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:1
Score:0.77
Offset:0
Orientation:forward strand
Alignment:TAACCCCA
TAATCCCN

Kr/dmmpmm(Pollard)/fly

Match Rank:2
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-TAACCCCA-
NTAACCCTTT

Kr/dmmpmm(Papatsenko)/fly

Match Rank:3
Score:0.73
Offset:0
Orientation:forward strand
Alignment:TAACCCCA-
TAACCCTTT

usp/dmmpmm(Bergman)/fly

Match Rank:4
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--TAACCCCA
CGTGACCCC-

MA0242.1_run::Bgb/Jaspar

Match Rank:5
Score:0.72
Offset:0
Orientation:forward strand
Alignment:TAACCCCA-
TAACCGCAA

bcd/dmmpmm(Papatsenko)/fly

Match Rank:6
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--TAACCCCA
CCTAATCCC-

MA0016.1_usp/Jaspar

Match Rank:7
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---TAACCCCA
CCGTGACCCC-

PB0057.1_Rxra_1/Jaspar

Match Rank:8
Score:0.72
Offset:-5
Orientation:forward strand
Alignment:-----TAACCCCA----
TGTCGTGACCCCTTAAT

bcd/dmmpmm(Bigfoot)/fly

Match Rank:9
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-TAACCCCA
CTAATCCN-

Ptx1/dmmpmm(Noyes_hd)/fly

Match Rank:10
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---TAACCCCA
NGTTAATCCC-