Information for motif42


Reverse Opposite:

p-value:1e-12
log p-value:-2.815e+01
Information Content per bp:1.722
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif12.63%
Number of Background Sequences with motif3.6
Percentage of Background Sequences with motif2.29%
Average Position of motif in Targets148.1 +/- 85.6bp
Average Position of motif in Background154.9 +/- 70.1bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0288.1_CUP9/Jaspar

Match Rank:1
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--TGTGTCSM
AATGTGTCA-

PL0004.1_hlh-27/Jaspar

Match Rank:2
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----TGTGTCSM--
ATGCGCGTGTCCCAG

PB0117.1_Eomes_2/Jaspar

Match Rank:3
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----TGTGTCSM---
GCGGAGGTGTCGCCTC

PL0018.1_hlh-25/Jaspar

Match Rank:4
Score:0.69
Offset:-6
Orientation:forward strand
Alignment:------TGTGTCSM--
AAGGCGCGTGTCCCAG

MET31(MacIsaac)/Yeast

Match Rank:5
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--TGTGTCSM
GGTGTGGC--

MA0327.1_MATA1/Jaspar

Match Rank:6
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--TGTGTCSM
ATTGTGC---

MATA1(MacIsaac)/Yeast

Match Rank:7
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--TGTGTCSM
ATTGTGC---

E(spl)/dmmpmm(Papatsenko)/fly

Match Rank:8
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TGTGTCSM---
CGTGCCNNGTG

MA0334.1_MET32/Jaspar

Match Rank:9
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TGTGTCSM
TGTGGCG-

MA0333.1_MET31/Jaspar

Match Rank:10
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--TGTGTCSM
AGTGTGGCG-