Information for motif1


Reverse Opposite:

p-value:1e-37
log p-value:-8.659e+01
Information Content per bp:1.789
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif16.04%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif1.03%
Average Position of motif in Targets125.4 +/- 76.4bp
Average Position of motif in Background167.6 +/- 61.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0283.1_CHA4/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GCGTAGRA
GGCGGAGA-

PB0114.1_Egr1_2/Jaspar

Match Rank:2
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----GCGTAGRA----
TGCGGAGTGGGACTGG

FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer

Match Rank:3
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----GCGTAGRA
NAVGCGCGTGDD-

MA0329.1_MBP1/Jaspar

Match Rank:4
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---GCGTAGRA
NNCGCGT----

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:5
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GCGTAGRA
TGCGTG---

MBP1/MBP1_H2O2Hi/[](Harbison)/Yeast

Match Rank:6
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GCGTAGRA
GACGCGT----

MA0540.1_DPY-27/Jaspar

Match Rank:7
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----GCGTAGRA---
TTATCGCGCAGGGANA

MA0330.1_MBP1::SWI6/Jaspar

Match Rank:8
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GCGTAGRA
AACGCGT----

SWI6(MacIsaac)/Yeast

Match Rank:9
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GCGTAGRA
CGCGTC---

MA0374.1_RSC3/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GCGTAGRA
CGCGCGG--