| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
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| 1 |  | Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer | 1e-5 | -1.332e+01 | 0.0005 | 13.0 | 9.85% | 4.0 | 2.49% | motif file (matrix) |
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| 2 |  | PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-3 | -8.033e+00 | 0.0492 | 21.0 | 15.91% | 11.1 | 7.02% | motif file (matrix) |
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| 3 |  | Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer | 1e-3 | -7.860e+00 | 0.0492 | 17.0 | 12.88% | 8.7 | 5.46% | motif file (matrix) |
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| 4 |  | Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer | 1e-2 | -6.906e+00 | 0.0759 | 9.0 | 6.82% | 3.2 | 2.04% | motif file (matrix) |
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| 5 |  | Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer | 1e-2 | -6.428e+00 | 0.0759 | 5.0 | 3.79% | 1.4 | 0.90% | motif file (matrix) |
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| 6 |  | RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer | 1e-2 | -6.428e+00 | 0.0759 | 5.0 | 3.79% | 1.6 | 1.03% | motif file (matrix) |
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| 7 |  | ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer | 1e-2 | -6.428e+00 | 0.0759 | 5.0 | 3.79% | 1.9 | 1.22% | motif file (matrix) |
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| 8 |  | Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer | 1e-2 | -6.356e+00 | 0.0759 | 18.0 | 13.64% | 10.2 | 6.42% | motif file (matrix) |
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| 9 |  | ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer | 1e-2 | -6.190e+00 | 0.0759 | 10.0 | 7.58% | 4.6 | 2.93% | motif file (matrix) |
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| 10 |  | SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer | 1e-2 | -6.081e+00 | 0.0759 | 38.0 | 28.79% | 29.8 | 18.81% | motif file (matrix) |
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| 11 |  | CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer | 1e-2 | -5.638e+00 | 0.0981 | 16.0 | 12.12% | 9.3 | 5.89% | motif file (matrix) |
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| 12 |  | Unknown4/Arabidopsis-Promoters/Homer | 1e-2 | -5.627e+00 | 0.0981 | 25.0 | 18.94% | 18.0 | 11.34% | motif file (matrix) |
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| 13 |  | Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer | 1e-2 | -5.543e+00 | 0.0981 | 27.0 | 20.45% | 19.6 | 12.38% | motif file (matrix) |
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| 14 |  | Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer | 1e-2 | -5.445e+00 | 0.0981 | 34.0 | 25.76% | 26.3 | 16.59% | motif file (matrix) |
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| 15 |  | Tal1 | 1e-2 | -4.927e+00 | 0.1464 | 14.0 | 10.61% | 8.7 | 5.49% | motif file (matrix) |
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