Information for motif5


Reverse Opposite:

p-value:1e-33
log p-value:-7.684e+01
Information Content per bp:1.785
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif13.69%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif1.04%
Average Position of motif in Targets124.2 +/- 87.8bp
Average Position of motif in Background100.2 +/- 50.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0326.1_MAC1/Jaspar

Match Rank:1
Score:0.68
Offset:2
Orientation:forward strand
Alignment:CGTGTTCTCG
--TTTGCTCA

MAC1/Literature(Harbison)/Yeast

Match Rank:2
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CGTGTTCTCG
--TTTGCTC-

MA0044.1_HMG-1/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CGTGTTCTCG
GTTGTACTC-

ara/dmmpmm(Noyes_hd)/fly

Match Rank:4
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CGTGTTCTCG
NNTGTTATTN

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CGTGTTCTCG-
-CTGTTCCTGG

hb/dmmpmm(Noyes)/fly

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CGTGTTCTCG--
TGTTTTTTTNGT

slp1/dmmpmm(Noyes)/fly

Match Rank:7
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CGTGTTCTCG--
-NTGTTTACATT

MA0261.1_lin-14/Jaspar

Match Rank:8
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CGTGTTCTCG
-GTGTTC---

MA0261.1_lin-14/Jaspar

Match Rank:9
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CGTGTTCTCG
-GTGTTC---

MA0458.1_slp1/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CGTGTTCTCG--
-TTGTTTACATT