Information for motif6


Reverse Opposite:

p-value:1e-27
log p-value:-6.400e+01
Information Content per bp:1.675
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif16.04%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif1.47%
Average Position of motif in Targets159.3 +/- 76.5bp
Average Position of motif in Background94.9 +/- 63.5bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0411.1_UPC2/Jaspar

Match Rank:1
Score:0.63
Offset:6
Orientation:reverse strand
Alignment:GCACGATCGT---
------TCGTATA

BEAF-32B/dmmpmm(Pollard)/fly

Match Rank:2
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GCACGATCGT
--AATATCGC

MA0327.1_MATA1/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GCACGATCGT
ACACAAT---

MATA1(MacIsaac)/Yeast

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GCACGATCGT
ACACAAT---

PH0044.1_Homez/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GCACGATCGT-------
AAAACATCGTTTTTAAG

Deaf1/dmmpmm(Pollard)/fly

Match Rank:6
Score:0.57
Offset:5
Orientation:forward strand
Alignment:GCACGATCGT-
-----TTCGGG

MA0185.1_Deaf1/Jaspar

Match Rank:7
Score:0.57
Offset:5
Orientation:forward strand
Alignment:GCACGATCGT-
-----TTCGGG

ZmHOX2a(2)(HD-HOX)/Zea mays/AthaMap

Match Rank:8
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GCACGATCGT
---TGATCTG

Dref/dmmpmm(SeSiMCMC)/fly

Match Rank:9
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GCACGATCGT---
---CTATCGATAT

Dref/dmmpmm(Bigfoot)/fly

Match Rank:10
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GCACGATCGT---
---CTATCGATAT