Information for motif29


Reverse Opposite:

p-value:1e-16
log p-value:-3.745e+01
Information Content per bp:1.701
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.54%
Average Position of motif in Targets137.0 +/- 94.8bp
Average Position of motif in Background137.7 +/- 24.6bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SPT23/SPT23_YPD/[](Harbison)/Yeast

Match Rank:1
Score:0.75
Offset:0
Orientation:forward strand
Alignment:GAATTCAAGG
GAAATCAA--

SPT23(MacIsaac)/Yeast

Match Rank:2
Score:0.75
Offset:0
Orientation:forward strand
Alignment:GAATTCAAGG
GAAATCAA--

MA0388.1_SPT23/Jaspar

Match Rank:3
Score:0.75
Offset:0
Orientation:forward strand
Alignment:GAATTCAAGG
GAAATCAA--

PB0171.1_Sox18_2/Jaspar

Match Rank:4
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----GAATTCAAGG-
GGACTGAATTCATGCC

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GAATTCAAGG
GCATTCCAGN

MA0505.1_Nr5a2/Jaspar

Match Rank:6
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GAATTCAAGG-----
AAGTTCAAGGTCAGC

PB0068.1_Sox1_1/Jaspar

Match Rank:7
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---GAATTCAAGG---
AATCAATTCAATAATT

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:8
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GAATTCAAGG
RCATTCCWGG

MA0325.1_LYS14/Jaspar

Match Rank:9
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GAATTCAAGG
CCGGAATT-----

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GAATTCAAGG-
-ACATCAAAGG