Information for motif15


Reverse Opposite:

p-value:1e-17
log p-value:-3.995e+01
Information Content per bp:1.692
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif6.7
Percentage of Background Sequences with motif4.21%
Average Position of motif in Targets126.2 +/- 83.7bp
Average Position of motif in Background111.9 +/- 63.9bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:1
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:GTTTTVTWTC
NTTTTATGAC

croc/dmmpmm(Bergman)/fly

Match Rank:2
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:GTTTTVTWTC
-TTTTAT---

PH0046.1_Hoxa10/Jaspar

Match Rank:3
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---GTTTTVTWTC---
TNAATTTTATTACCTN

hb/dmmpmm(Noyes)/fly

Match Rank:4
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GTTTTVTWTC-
TGTTTTTTTNGT

PH0013.1_Cdx2/Jaspar

Match Rank:5
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--GTTTTVTWTC----
NAATTTTATTACCNNN

MA0465.1_CDX2/Jaspar

Match Rank:6
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:GTTTTVTWTC--
-TTTTATGGCTN

Abd-B/dmmpmm(Noyes_hd)/fly

Match Rank:7
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GTTTTVTWTC
GTTTTATGAC

PH0012.1_Cdx1/Jaspar

Match Rank:8
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GTTTTVTWTC----
NAATTTTATTACCTNN

PH0064.1_Hoxb9/Jaspar

Match Rank:9
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---GTTTTVTWTC---
NGANTTTTATGGCTCN

abd-B/dmmpmm(Noyes)/fly

Match Rank:10
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GTTTTVTWTC
GTTTTATGA-