Information for motif16


Reverse Opposite:

p-value:1e-20
log p-value:-4.689e+01
Information Content per bp:1.599
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif10.38%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.71%
Average Position of motif in Targets152.2 +/- 79.7bp
Average Position of motif in Background273.8 +/- 1.9bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

byn/dmmpmm(SeSiMCMC)/fly

Match Rank:1
Score:0.69
Offset:0
Orientation:forward strand
Alignment:AATTSGCWVTWW
AATTCGCAC---

PH0098.1_Lhx8/Jaspar

Match Rank:2
Score:0.63
Offset:-6
Orientation:forward strand
Alignment:------AATTSGCWVTWW
ACCCCTAATTAGCGGTG-

PH0155.1_Prrx2/Jaspar

Match Rank:3
Score:0.62
Offset:-7
Orientation:reverse strand
Alignment:-------AATTSGCWVTWW
NTTCGCTAATTAGCTNT--

PH0074.1_Hoxd1/Jaspar

Match Rank:4
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------AATTSGCWVTWW
TAAACTAATTAGCTGTA-

PH0097.1_Lhx6_2/Jaspar

Match Rank:5
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------AATTSGCWVTWW
TCCACTAATTAGCGGTT-

PH0032.1_Evx2/Jaspar

Match Rank:6
Score:0.61
Offset:-6
Orientation:reverse strand
Alignment:------AATTSGCWVTWW
ANCGCTAATTAGCGGTN-

byn/dmmpmm(Pollard)/fly

Match Rank:7
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:AATTSGCWVTWW
---TCGCACTT-

prd/dmmpmm(SeSiMCMC)/fly

Match Rank:8
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AATTSGCWVTWW
GATTATCAC---

PH0024.1_Dlx5/Jaspar

Match Rank:9
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----AATTSGCWVTWW
GGGGTAATTAGCTCTG-

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:10
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AATTSGCWVTWW
-ATTAACACCT-