Information for motif1


Reverse Opposite:

p-value:1e-53
log p-value:-1.227e+02
Information Content per bp:1.728
Number of Target Sequences with motif44.0
Percentage of Target Sequences with motif23.16%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.86%
Average Position of motif in Targets141.6 +/- 86.5bp
Average Position of motif in Background74.0 +/- 5.6bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

UME1/UME1_YPD/[](Harbison)/Yeast

Match Rank:1
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GRAGGAAAGC--
-AAGGAAANGTA

MA0020.1_Dof2/Jaspar

Match Rank:2
Score:0.65
Offset:5
Orientation:forward strand
Alignment:GRAGGAAAGC-
-----AAAGCA

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:3
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GRAGGAAAGC
NACAGGAAAT-

MA0053.1_MNB1A/Jaspar

Match Rank:4
Score:0.64
Offset:5
Orientation:forward strand
Alignment:GRAGGAAAGC
-----AAAGC

MA0064.1_PBF/Jaspar

Match Rank:5
Score:0.64
Offset:5
Orientation:forward strand
Alignment:GRAGGAAAGC
-----AAAGC

MA0598.1_EHF/Jaspar

Match Rank:6
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GRAGGAAAGC
-CAGGAAGG-

MA0136.1_ELF5/Jaspar

Match Rank:7
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GRAGGAAAGC
-AAGGAAGTA

MA0021.1_Dof3/Jaspar

Match Rank:8
Score:0.62
Offset:5
Orientation:forward strand
Alignment:GRAGGAAAGC-
-----AAAGCG

AT/dmmpmm(Papatsenko)/fly

Match Rank:9
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GRAGGAAAGC
ATGAACGAAT--

MA0474.1_Erg/Jaspar

Match Rank:10
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GRAGGAAAGC-
ACAGGAAGTGG