Information for motif20


Reverse Opposite:

p-value:1e-27
log p-value:-6.296e+01
Information Content per bp:1.840
Number of Target Sequences with motif31.0
Percentage of Target Sequences with motif4.99%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.49%
Average Position of motif in Targets163.7 +/- 92.2bp
Average Position of motif in Background120.2 +/- 10.5bp
Strand Bias (log2 ratio + to - strand density)1.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

h/dmmpmm(Bergman)/fly

Match Rank:1
Score:0.84
Offset:0
Orientation:forward strand
Alignment:GAGGCACGCG----
NNGGCACGCGCCAN

PB0147.1_Max_2/Jaspar

Match Rank:2
Score:0.75
Offset:0
Orientation:forward strand
Alignment:GAGGCACGCG----
GTGCCACGCGACTG

PL0004.1_hlh-27/Jaspar

Match Rank:3
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--GAGGCACGCG---
NNGGGACACGCGCNT

PL0018.1_hlh-25/Jaspar

Match Rank:4
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--GAGGCACGCG----
NNGGGACACGCGCCNN

MA0449.1_h/Jaspar

Match Rank:5
Score:0.73
Offset:2
Orientation:forward strand
Alignment:GAGGCACGCG--
--GGCACGTGCC

h/dmmpmm(Noyes)/fly

Match Rank:6
Score:0.73
Offset:2
Orientation:forward strand
Alignment:GAGGCACGCG---
--GNCACGCGCCA

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:7
Score:0.73
Offset:4
Orientation:reverse strand
Alignment:GAGGCACGCG
----CACGCA

PHD1(MacIsaac)/Yeast

Match Rank:8
Score:0.73
Offset:1
Orientation:forward strand
Alignment:GAGGCACGCG
-AGGCAC---

PL0016.1_ref-1/Jaspar

Match Rank:9
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--GAGGCACGCG-----
TCAAGGCACGTGCCTTA

MA0329.1_MBP1/Jaspar

Match Rank:10
Score:0.68
Offset:5
Orientation:forward strand
Alignment:GAGGCACGCG--
-----ACGCGTA