Information for motif27


Reverse Opposite:

p-value:1e-24
log p-value:-5.711e+01
Information Content per bp:1.740
Number of Target Sequences with motif37.0
Percentage of Target Sequences with motif5.96%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.78%
Average Position of motif in Targets135.3 +/- 82.1bp
Average Position of motif in Background117.1 +/- 35.7bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0318.1_HMRA2/Jaspar

Match Rank:1
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:GCAATTTACACG
----ATTACATG

MA0328.1_MATALPHA2/Jaspar

Match Rank:2
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:GCAATTTACACG
---AATTACATG

byn/dmmpmm(SeSiMCMC)/fly

Match Rank:3
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GCAATTTACACG
--AATTCGCAC-

PB0146.1_Mafk_2/Jaspar

Match Rank:4
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----GCAATTTACACG
CCTTGCAATTTTTNN-

NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GCAATTTACACG
GGGAATTTCC---

ABF1(MacIsaac)/Yeast

Match Rank:6
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GCAATTTACACG-
TATCACTNTNNACGA

ABF1/ABF1_YPD/62-ABF1(Harbison)/Yeast

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GCAATTTACACG
ATCACTNTNNACG

prd/dmmpmm(SeSiMCMC)/fly

Match Rank:8
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GCAATTTACACG
--GATTATCAC-

prd/dmmpmm(Bigfoot)/fly

Match Rank:9
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GCAATTTACACG
---ATTATCAC-

OsCBT(CAMTA)/Oryza sativa/AthaMap

Match Rank:10
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GCAATTTACACG--
CGCAAAAAACGCGNA