Information for motif40


Reverse Opposite:

p-value:1e-9
log p-value:-2.135e+01
Information Content per bp:1.620
Number of Target Sequences with motif57.0
Percentage of Target Sequences with motif9.18%
Number of Background Sequences with motif13.2
Percentage of Background Sequences with motif3.74%
Average Position of motif in Targets146.2 +/- 83.4bp
Average Position of motif in Background150.5 +/- 75.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0379.1_SIG1/Jaspar

Match Rank:1
Score:0.88
Offset:3
Orientation:forward strand
Alignment:CCTATATA
---ATATA

TATA-box/SacCer-Promoters/Homer

Match Rank:2
Score:0.86
Offset:2
Orientation:reverse strand
Alignment:CCTATATA----
--TATATAWDVV

PB0163.1_Six6_2/Jaspar

Match Rank:3
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--CCTATATA-------
ATGGGATATATCCGCCT

TBP(- other)/several species/AthaMap

Match Rank:4
Score:0.77
Offset:0
Orientation:forward strand
Alignment:CCTATATA----
ACTATAAATACC

Cf2/dmmpmm(Bergman)/fly

Match Rank:5
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:CCTATATA-
TATATATAC

MA0015.1_Cf2_II/Jaspar

Match Rank:6
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-CCTATATA-
NTATATATAC

MA0345.1_NHP6A/Jaspar

Match Rank:7
Score:0.75
Offset:-6
Orientation:forward strand
Alignment:------CCTATATA-------
ATGACCTATATATAAAAATGA

MA0108.2_TBP/Jaspar

Match Rank:8
Score:0.74
Offset:-6
Orientation:reverse strand
Alignment:------CCTATATA-
NNNNNNCTTTTATAN

POL012.1_TATA-Box/Jaspar

Match Rank:9
Score:0.74
Offset:-6
Orientation:reverse strand
Alignment:------CCTATATA-
NNNNNNCTTTTATAN

MA0346.1_NHP6B/Jaspar

Match Rank:10
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----CCTATATA--------
TTTATTTATATATAATATGA