Information for motif18


Reverse Opposite:

p-value:1e-16
log p-value:-3.833e+01
Information Content per bp:1.668
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif12.88%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.89%
Average Position of motif in Targets169.9 +/- 70.6bp
Average Position of motif in Background12.5 +/- 0.4bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0136.1_IRC900814_2/Jaspar

Match Rank:1
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-TTCACGATTTTA---
TTTTACGACTTTCCAT

PH0047.1_Hoxa11/Jaspar

Match Rank:2
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----TTCACGATTTTA
NNGTTTTACGACTTTA

PH0066.1_Hoxc11/Jaspar

Match Rank:3
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----TTCACGATTTTA
NNNTTTTACGACNTTN

PH0076.1_Hoxd11/Jaspar

Match Rank:4
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----TTCACGATTTTA
ANNATTTTACGACNTNA

PH0065.1_Hoxc10/Jaspar

Match Rank:5
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----TTCACGATTTTA
ANNTTTTACGACNTNN

BEAF-32B/dmmpmm(Pollard)/fly

Match Rank:6
Score:0.61
Offset:3
Orientation:forward strand
Alignment:TTCACGATTTTA
---ACGATACT-

PH0077.1_Hoxd12/Jaspar

Match Rank:7
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----TTCACGATTTTA
NNNATTTTACGACNNTN

PH0067.1_Hoxc12/Jaspar

Match Rank:8
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----TTCACGATTTTA
GNNNTTTTACGACCTNA

croc/dmmpmm(Bergman)/fly

Match Rank:9
Score:0.60
Offset:7
Orientation:reverse strand
Alignment:TTCACGATTTTA-
-------TTTTAT

br-Z2/dmmpmm(Bergman)/fly

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TTCACGATTTTA
TTAACTATTT--