| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
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| 1 |  | TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer | 1e-11 | -2.726e+01 | 0.0000 | 38.0 | 6.99% | 5.8 | 2.02% | motif file (matrix) |
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| 2 |  | EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer | 1e-10 | -2.451e+01 | 0.0000 | 17.0 | 3.12% | 2.0 | 0.69% | motif file (matrix) |
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| 3 |  | ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer | 1e-6 | -1.496e+01 | 0.0000 | 32.0 | 5.88% | 6.8 | 2.39% | motif file (matrix) |
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| 4 |  | KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer | 1e-5 | -1.352e+01 | 0.0001 | 24.0 | 4.41% | 4.8 | 1.67% | motif file (matrix) |
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| 5 |  | GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer | 1e-4 | -1.042e+01 | 0.0015 | 10.0 | 1.84% | 1.8 | 0.62% | motif file (matrix) |
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| 6 |  | Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer | 1e-4 | -1.042e+01 | 0.0015 | 10.0 | 1.84% | 1.9 | 0.67% | motif file (matrix) |
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| 7 |  | CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer | 1e-4 | -1.025e+01 | 0.0015 | 36.0 | 6.62% | 9.3 | 3.25% | motif file (matrix) |
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| 8 |  | Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer | 1e-3 | -9.096e+00 | 0.0042 | 29.0 | 5.33% | 7.5 | 2.64% | motif file (matrix) |
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| 9 |  | Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer | 1e-3 | -8.981e+00 | 0.0042 | 26.0 | 4.78% | 6.9 | 2.43% | motif file (matrix) |
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| 10 |  | TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer | 1e-3 | -8.903e+00 | 0.0042 | 62.0 | 11.40% | 20.7 | 7.24% | motif file (matrix) |
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| 11 |  | RLR1?/SacCer-Promoters/Homer | 1e-3 | -8.727e+00 | 0.0045 | 9.0 | 1.65% | 0.7 | 0.25% | motif file (matrix) |
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| 12 |  | Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer | 1e-3 | -7.276e+00 | 0.0175 | 24.0 | 4.41% | 6.9 | 2.41% | motif file (matrix) |
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| 13 |  | NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer | 1e-2 | -6.792e+00 | 0.0262 | 58.0 | 10.66% | 20.9 | 7.33% | motif file (matrix) |
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| 14 |  | DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer | 1e-2 | -6.656e+00 | 0.0278 | 243.0 | 44.67% | 110.0 | 38.54% | motif file (matrix) |
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| 15 |  | Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer | 1e-2 | -6.271e+00 | 0.0382 | 99.0 | 18.20% | 39.9 | 13.97% | motif file (matrix) |
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| 16 |  | c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-2 | -6.086e+00 | 0.0431 | 14.0 | 2.57% | 3.9 | 1.37% | motif file (matrix) |
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| 17 |  | Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.957e+00 | 0.0461 | 83.0 | 15.26% | 32.1 | 11.27% | motif file (matrix) |
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| 18 |  | Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer | 1e-2 | -5.694e+00 | 0.0567 | 37.0 | 6.80% | 12.6 | 4.41% | motif file (matrix) |
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| 19 |  | GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-2 | -5.666e+00 | 0.0567 | 7.0 | 1.29% | 0.6 | 0.22% | motif file (matrix) |
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| 20 |  | GFX(?)/Promoter/Homer | 1e-2 | -5.151e+00 | 0.0877 | 10.0 | 1.84% | 2.4 | 0.84% | motif file (matrix) |
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| 21 |  | FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer | 1e-2 | -4.825e+00 | 0.1159 | 33.0 | 6.07% | 11.9 | 4.17% | motif file (matrix) |
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