Information for motif28


Reverse Opposite:

p-value:1e-12
log p-value:-2.974e+01
Information Content per bp:1.785
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif13.64%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif1.54%
Average Position of motif in Targets187.1 +/- 102.6bp
Average Position of motif in Background104.2 +/- 45.4bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

P(MYB)/Zea mays/AthaMap

Match Rank:1
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-TGGTTGGA
CNGGTAGGT

MA0315.1_HAP4/Jaspar

Match Rank:2
Score:0.72
Offset:-7
Orientation:reverse strand
Alignment:-------TGGTTGGA
NNGNNNCTGATTGGN

OPI1/Literature(Harbison)/Yeast

Match Rank:3
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:TGGTTGGA
-GATTCGA

HAP4(MacIsaac)/Yeast

Match Rank:4
Score:0.70
Offset:-7
Orientation:reverse strand
Alignment:-------TGGTTGGA
TCGNNNCTGATTGGT

HAP2(MacIsaac)/Yeast

Match Rank:5
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-TGGTTGGA
CTCATTGG-

MA0313.1_HAP2/Jaspar

Match Rank:6
Score:0.67
Offset:3
Orientation:forward strand
Alignment:TGGTTGGA
---TTGGT

HAP4/HAP4_YPD/1-GZF3,11-HAP4(Harbison)/Yeast

Match Rank:7
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TGGTTGGA-
TGATTGGCC

grh/dmmpmm(Bigfoot)/fly

Match Rank:8
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-TGGTTGGA
CTGGTT---

Aef1/dmmpmm(Bergman)/fly

Match Rank:9
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TGGTTGGA
TTGTTG--

MA0193.1_Lag1/Jaspar

Match Rank:10
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TGGTTGGA
TTGGTAG--