Information for motif16


Reverse Opposite:

p-value:1e-29
log p-value:-6.890e+01
Information Content per bp:1.746
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif5.31%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.54%
Average Position of motif in Targets161.2 +/- 80.2bp
Average Position of motif in Background119.7 +/- 34.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:1
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:CCTGCGTGCGAA
-TTGCGTGCVA-

Su(H)/dmmpmm(Papatsenko)/fly

Match Rank:2
Score:0.69
Offset:4
Orientation:forward strand
Alignment:CCTGCGTGCGAA-
----CGTGGGAAC

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:3
Score:0.69
Offset:2
Orientation:forward strand
Alignment:CCTGCGTGCGAA
--TGCGTG----

byn/dmmpmm(SeSiMCMC)/fly

Match Rank:4
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:CCTGCGTGCGAA--
-----GTGCGAATT

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:5
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:CCTGCGTGCGAA--
----CSTGGGAAAD

MA0085.1_Su(H)/Jaspar

Match Rank:6
Score:0.63
Offset:3
Orientation:forward strand
Alignment:CCTGCGTGCGAA-------
---CTGTGGGAAACGAGAT

MA0541.1_EFL-1/Jaspar

Match Rank:7
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CCTGCGTGCGAA---
CGCGCGCGCGAAATT

HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:8
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CCTGCGTGCGAA
--TACGTGCV--

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:9
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CCTGCGTGCGAA
-GGACGTGC---

MA0375.1_RSC30/Jaspar

Match Rank:10
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CCTGCGTGCGAA
--CGCGCGCG--