Information for motif38


Reverse Opposite:

p-value:1e-10
log p-value:-2.336e+01
Information Content per bp:1.530
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif9.09%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.67%
Average Position of motif in Targets138.8 +/- 99.3bp
Average Position of motif in Background222.2 +/- 41.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0379.1_SIG1/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TATATWGTGGAT
TATAT-------

MA0345.1_NHP6A/Jaspar

Match Rank:2
Score:0.64
Offset:-7
Orientation:reverse strand
Alignment:-------TATATWGTGGAT--
NNATNNTTATATATAGNNNAN

MA0386.1_TBP/Jaspar

Match Rank:3
Score:0.63
Offset:-9
Orientation:forward strand
Alignment:---------TATATWGTGGAT
GACTAGATATATATATTCGAT

slbo/dmmpmm(Bergman)/fly

Match Rank:4
Score:0.61
Offset:2
Orientation:forward strand
Alignment:TATATWGTGGAT
--GATTGCNNAA

TATA-box/SacCer-Promoters/Homer

Match Rank:5
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TATATWGTGGAT
TATATAWDVV--

MA0033.1_FOXL1/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TATATWGTGGAT
TATGTNTA----

TBP(- other)/several species/AthaMap

Match Rank:7
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----TATATWGTGGAT
GGTATTTATAGN----

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.59
Offset:3
Orientation:forward strand
Alignment:TATATWGTGGAT---
---NNTGTGGATTSS

MA0346.1_NHP6B/Jaspar

Match Rank:9
Score:0.58
Offset:-8
Orientation:forward strand
Alignment:--------TATATWGTGGAT
TTTATTTATATATAATATGA

PB0080.1_Tbp_1/Jaspar

Match Rank:10
Score:0.57
Offset:-6
Orientation:reverse strand
Alignment:------TATATWGTGGAT
NANTTATATATAANGN--