Information for motif38


Reverse Opposite:

p-value:1e-17
log p-value:-4.100e+01
Information Content per bp:1.831
Number of Target Sequences with motif57.0
Percentage of Target Sequences with motif9.18%
Number of Background Sequences with motif9.0
Percentage of Background Sequences with motif2.53%
Average Position of motif in Targets133.1 +/- 80.8bp
Average Position of motif in Background159.1 +/- 87.5bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0450.1_hkb/Jaspar

Match Rank:1
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-CAMGCCGA
TCACGCCCC

hkb/dmmpmm(Noyes)/fly

Match Rank:2
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---CAMGCCGA-
CNTCACGCCCCC

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:3
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CAMGCCGA
CACGCA--

POL006.1_BREu/Jaspar

Match Rank:4
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CAMGCCGA
AGCGCGCC--

PB0180.1_Sp4_2/Jaspar

Match Rank:5
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----CAMGCCGA--
NNGGCCACGCCTTTN

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:6
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CAMGCCGA
TBGCACGCAA-

Med/dmmpmm(Pollard)/fly

Match Rank:7
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CAMGCCGA
ACTGCCAGCCGC

MA0394.1_STP1/Jaspar

Match Rank:8
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CAMGCCGA-
-GCGCCGCA

MA0161.1_NFIC/Jaspar

Match Rank:9
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CAMGCCGA
--TGCCAA

MA0368.1_RIM101/Jaspar

Match Rank:10
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CAMGCCGA-
--CGCCAAG