Information for motif5


Reverse Opposite:

p-value:1e-41
log p-value:-9.534e+01
Information Content per bp:1.860
Number of Target Sequences with motif53.0
Percentage of Target Sequences with motif9.74%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.79%
Average Position of motif in Targets147.4 +/- 90.6bp
Average Position of motif in Background142.1 +/- 43.4bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ZmHOX2a(1)(HD-HOX)/Zea mays/AthaMap

Match Rank:1
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--AGGACGVCGG
TTAGGAC-----

Unknown4/Arabidopsis-Promoters/Homer

Match Rank:2
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-AGGACGVCGG
RAAGAMGAMG-

ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer

Match Rank:3
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--AGGACGVCGG
ACAGGATGTGGT

MA0098.2_Ets1/Jaspar

Match Rank:4
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----AGGACGVCGG
NNNACAGGAAGTGGN

ttk/dmmpmm(Bigfoot)/fly

Match Rank:5
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-AGGACGVCGG
CAGGACC----

MA0474.1_Erg/Jaspar

Match Rank:6
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AGGACGVCGG
ACAGGAAGTGG-

PB0200.1_Zfp187_2/Jaspar

Match Rank:7
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---AGGACGVCGG---
NNAGGGACAAGGGCNC

MA0553.1_SMZ/Jaspar

Match Rank:8
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:AGGACGVCGG
-GTACGAGG-

Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer

Match Rank:9
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AGGACGVCGG
AGCACGTGGG

MA0598.1_EHF/Jaspar

Match Rank:10
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-AGGACGVCGG
CAGGAAGG---