Information for motif18


Reverse Opposite:

p-value:1e-19
log p-value:-4.500e+01
Information Content per bp:1.625
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif12.74%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif1.61%
Average Position of motif in Targets163.9 +/- 72.6bp
Average Position of motif in Background211.5 +/- 39.0bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0164.1_Nr2e3/Jaspar

Match Rank:1
Score:0.76
Offset:1
Orientation:forward strand
Alignment:GCAAGCTC
-CAAGCTT

PB0014.1_Esrra_1/Jaspar

Match Rank:2
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---GCAAGCTC------
TATTCAAGGTCATGCGA

GCR2(MacIsaac)/Yeast

Match Rank:3
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GCAAGCTC
NGGAAGC--

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GCAAGCTC
--CAGCC-

MA0141.2_Esrrb/Jaspar

Match Rank:5
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GCAAGCTC-
AGCTCAAGGTCA

MA0305.1_GCR2/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GCAAGCTC
NGGAAGC--

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:7
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GCAAGCTC-
BTCAAGGTCA

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GCAAGCTC--
TCAAGGTCAN

MA0592.1_ESRRA/Jaspar

Match Rank:9
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GCAAGCTC---
CCAAGGTCACA

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:10
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GCAAGCTC-
NTCAAGGTCA