Information for motif25


Reverse Opposite:

p-value:1e-18
log p-value:-4.175e+01
Information Content per bp:1.555
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif14.15%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif2.19%
Average Position of motif in Targets114.1 +/- 75.5bp
Average Position of motif in Background143.5 +/- 89.8bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RTG3/Literature(Harbison)/Yeast

Match Rank:1
Score:0.69
Offset:2
Orientation:forward strand
Alignment:CCSGKCAC
--GGTCAC

HVH21(HD-KNOTTED)/Hordeum vulgare/AthaMap

Match Rank:2
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-CCSGKCAC---
ANCTGTCACNNN

brk/dmmpmm(Down)/fly

Match Rank:3
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CCSGKCAC-
-CCGGCGCT

PHD1(MacIsaac)/Yeast

Match Rank:4
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CCSGKCAC
--AGGCAC

Med/dmmpmm(Pollard)/fly

Match Rank:5
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----CCSGKCAC
ACTGCCAGCCGC

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----CCSGKCAC----
CAAATCCAGACATCACA

PB0164.1_Smad3_2/Jaspar

Match Rank:7
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----CCSGKCAC----
TACGCCCCGCCACTCTG

SUT1?/SacCer-Promoters/Homer

Match Rank:8
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CCSGKCAC
CCCCGCGC

E(spl)/dmmpmm(Papatsenko)/fly

Match Rank:9
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CCSGKCAC-
CACAAGGCACA

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CCSGKCAC
CCAGACAG