Information for motif8


Reverse Opposite:

p-value:1e-18
log p-value:-4.316e+01
Information Content per bp:1.454
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif17.42%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif1.85%
Average Position of motif in Targets153.0 +/- 97.4bp
Average Position of motif in Background125.1 +/- 70.9bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0067.1_Pax2/Jaspar

Match Rank:1
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:AMKCRTRA--
--NCGTGACN

PB0108.1_Atf1_2/Jaspar

Match Rank:2
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---AMKCRTRA---
NTTATTCGTCATNC

MA0069.1_Pax6/Jaspar

Match Rank:3
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----AMKCRTRA-
AANTCATGCGTGAA

cad/dmmpmm(Bigfoot)/fly

Match Rank:4
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AMKCRTRA-
AANCATAAA

PH0048.1_Hoxa13/Jaspar

Match Rank:5
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---AMKCRTRA-----
AAACCTCGTAAAATTT

cad/dmmpmm(SeSiMCMC)/fly

Match Rank:6
Score:0.58
Offset:2
Orientation:forward strand
Alignment:AMKCRTRA-
--GCATAAA

RTG3(MacIsaac)/Yeast

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:AMKCRTRA-
-TGAGTCAT

prd-PD/dmmpmm(Bergman)/fly

Match Rank:8
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----AMKCRTRA-----
TGTCAACCGTGACGANA

cad/dmmpmm(Pollard)/fly

Match Rank:9
Score:0.56
Offset:1
Orientation:forward strand
Alignment:AMKCRTRA--
-ATCATAAAA

PH0068.1_Hoxc13/Jaspar

Match Rank:10
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---AMKCRTRA-----
AAAGCTCGTAAAATTT