Information for motif29


Reverse Opposite:

p-value:1e-24
log p-value:-5.711e+01
Information Content per bp:1.885
Number of Target Sequences with motif37.0
Percentage of Target Sequences with motif5.96%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.78%
Average Position of motif in Targets167.3 +/- 86.3bp
Average Position of motif in Background253.2 +/- 24.3bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MAC1/Literature(Harbison)/Yeast

Match Rank:1
Score:0.85
Offset:0
Orientation:forward strand
Alignment:GAGCTAAA
GAGCAAA-

MA0326.1_MAC1/Jaspar

Match Rank:2
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-GAGCTAAA
TGAGCAAA-

MAC1(MacIsaac)/Yeast

Match Rank:3
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-GAGCTAAA-
TGAGCGAAAA

MA0287.1_CUP2/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GAGCTAAA---
CAGCAAAAATG

pan/dmmpmm(Pollard)/fly

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GAGCTAAA
GATCAAAG

MA0049.1_hb/Jaspar

Match Rank:6
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GAGCTAAA--
GCATAAAAAA

cad/dmmpmm(Pollard)/fly

Match Rank:7
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GAGCTAAA--
-ATCATAAAA

Trl/dmmpmm(Bigfoot)/fly

Match Rank:8
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----GAGCTAAA
AGAGAGAGAGNAA

exd/dmmpmm(Pollard)/fly

Match Rank:9
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GAGCTAAA
TAAAACAAAA

gt/dmmpmm(SeSiMCMC)/fly

Match Rank:10
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:GAGCTAAA--
----TAAAAA