Information for motif2


Reverse Opposite:

p-value:1e-46
log p-value:-1.064e+02
Information Content per bp:1.604
Number of Target Sequences with motif57.0
Percentage of Target Sequences with motif10.48%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.94%
Average Position of motif in Targets144.5 +/- 77.8bp
Average Position of motif in Background209.7 +/- 38.3bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

gt/dmmpmm(Bigfoot)/fly

Match Rank:1
Score:0.72
Offset:0
Orientation:forward strand
Alignment:GTAAAAAGACGG
GTAAAAA-----

pan/dmmpmm(Down)/fly

Match Rank:2
Score:0.70
Offset:2
Orientation:forward strand
Alignment:GTAAAAAGACGG
--AAAAACA---

gt/dmmpmm(SeSiMCMC)/fly

Match Rank:3
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:GTAAAAAGACGG
-TAAAAA-----

hb/dmmpmm(SeSiMCMC)/fly

Match Rank:4
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GTAAAAAGACGG
-AAAAAA-----

croc/dmmpmm(Bergman)/fly

Match Rank:5
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GTAAAAAGACGG
ATAAAA------

hb/dmmpmm(Pollard)/fly

Match Rank:6
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GTAAAAAGACGG
ATAAAAAA----

GT1(Trihelix)/Nicotiana tabacum/AthaMap

Match Rank:7
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----GTAAAAAGACGG
AAATGGTAAAAA-----

hb/dmmpmm(Down)/fly

Match Rank:8
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GTAAAAAGACGG
CATAAAAAA----

hb/dmmpmm(Bigfoot)/fly

Match Rank:9
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GTAAAAAGACGG
CATAAAAAA----

MA0277.1_AZF1/Jaspar

Match Rank:10
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GTAAAAAGACGG
--AAAAAGAAA-