Information for motif30


Reverse Opposite:

p-value:1e-12
log p-value:-2.912e+01
Information Content per bp:1.635
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif10.61%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.76%
Average Position of motif in Targets148.1 +/- 98.9bp
Average Position of motif in Background253.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0374.1_RSC3/Jaspar

Match Rank:1
Score:0.78
Offset:3
Orientation:forward strand
Alignment:GTMCGCGCGT
---CGCGCGG

MA0375.1_RSC30/Jaspar

Match Rank:2
Score:0.78
Offset:1
Orientation:forward strand
Alignment:GTMCGCGCGT
-CGCGCGCG-

HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:3
Score:0.73
Offset:1
Orientation:forward strand
Alignment:GTMCGCGCGT
-TACGTGCV-

PB0095.1_Zfp161_1/Jaspar

Match Rank:4
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----GTMCGCGCGT--
NCANGCGCGCGCGCCA

HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:5
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--GTMCGCGCGT
GGGTACGTGC--

FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer

Match Rank:6
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-GTMCGCGCGT-
HHCACGCGCBTN

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:7
Score:0.71
Offset:0
Orientation:forward strand
Alignment:GTMCGCGCGT
GGACGTGC--

MA0329.1_MBP1/Jaspar

Match Rank:8
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:GTMCGCGCGT
-NNCGCGT--

DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer

Match Rank:9
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:GTMCGCGCGT--
----GCGCGCTA

PB0199.1_Zfp161_2/Jaspar

Match Rank:10
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GTMCGCGCGT-----
-GCCGCGCAGTGCGT