Information for motif25


Reverse Opposite:

p-value:1e-24
log p-value:-5.685e+01
Information Content per bp:1.573
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif6.99%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.82%
Average Position of motif in Targets171.2 +/- 79.8bp
Average Position of motif in Background240.4 +/- 43.7bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0261.1_lin-14/Jaspar

Match Rank:1
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-CGTTCGTGTY
GTGTTC-----

MA0261.1_lin-14/Jaspar

Match Rank:2
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-CGTTCGTGTY
GTGTTC-----

MA0401.1_SWI4/Jaspar

Match Rank:3
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:CGTTCGTGTY
-TTTCGCGT-

Deaf1/dmmpmm(Pollard)/fly

Match Rank:4
Score:0.70
Offset:2
Orientation:forward strand
Alignment:CGTTCGTGTY
--TTCGGG--

MA0185.1_Deaf1/Jaspar

Match Rank:5
Score:0.70
Offset:2
Orientation:forward strand
Alignment:CGTTCGTGTY
--TTCGGG--

MA0329.1_MBP1/Jaspar

Match Rank:6
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CGTTCGTGTY
--NNCGCGT-

SWI4(MacIsaac)/Yeast

Match Rank:7
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CGTTCGTGTY
TTTTCGCGT-

STB1/STB1_YPD/1-SWI4,1-SWI6(Harbison)/Yeast

Match Rank:8
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CGTTCGTGTY-
-TTTCGCGTTT

SWI4/SWI4_YPD/29-SWI4,29-SWI6(Harbison)/Yeast

Match Rank:9
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CGTTCGTGTY
-TTTCGCGTC

OPI1(MacIsaac)/Yeast

Match Rank:10
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CGTTCGTGTY
CGGTTCG----