Information for motif3


Reverse Opposite:

p-value:1e-43
log p-value:-1.004e+02
Information Content per bp:1.688
Number of Target Sequences with motif44.0
Percentage of Target Sequences with motif8.09%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.63%
Average Position of motif in Targets170.0 +/- 79.2bp
Average Position of motif in Background168.3 +/- 38.6bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Su(H)/dmmpmm(Bergman)/fly

Match Rank:1
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GKGAGAAGAA
ATGAGAA---

Su(H)/dmmpmm(Papatsenko)/fly

Match Rank:2
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-GKGAGAAGAA
CGTGGGAAC--

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:3
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GKGAGAAGAA
CSTGGGAAAD-

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GKGAGAAGAA
GGCGGGAARN-

SeqBias: GA-repeat

Match Rank:5
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GKGAGAAGAA
GAGAGAGAGA

PB0013.1_Eomes_1/Jaspar

Match Rank:6
Score:0.66
Offset:-6
Orientation:forward strand
Alignment:------GKGAGAAGAA-
GAAAAGGTGTGAAAATT

MA0471.1_E2F6/Jaspar

Match Rank:7
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GKGAGAAGAA
GGGCGGGAAGG-

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:8
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GKGAGAAGAA
AGGTGTGAAM--

MA0470.1_E2F4/Jaspar

Match Rank:9
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GKGAGAAGAA
GGGCGGGAAGG-

Trl/dmmpmm(Bigfoot)/fly

Match Rank:10
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---GKGAGAAGAA
AGAGAGAGAGNAA