Information for motif36


Reverse Opposite:

p-value:1e-17
log p-value:-3.916e+01
Information Content per bp:1.610
Number of Target Sequences with motif41.0
Percentage of Target Sequences with motif7.54%
Number of Background Sequences with motif4.7
Percentage of Background Sequences with motif1.66%
Average Position of motif in Targets148.8 +/- 83.6bp
Average Position of motif in Background151.1 +/- 40.2bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PL0002.1_hlh-2::hlh-3/Jaspar

Match Rank:1
Score:0.78
Offset:-4
Orientation:reverse strand
Alignment:----AGCAGTTG-----
NATNAGCAGGTGTTNNN

PB0003.1_Ascl2_1/Jaspar

Match Rank:2
Score:0.78
Offset:-4
Orientation:reverse strand
Alignment:----AGCAGTTG-----
NNNNAGCAGCTGCTGAN

MA0522.1_Tcf3/Jaspar

Match Rank:3
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-AGCAGTTG--
NTGCAGCTGTG

Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-AGCAGTTG-
CAGCAGCTGN

MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:5
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--AGCAGTTG--
NNAGCAGCTGCT

SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:6
Score:0.76
Offset:0
Orientation:forward strand
Alignment:AGCAGTTG
ANCAGCTG

PL0011.1_hlh-2::hlh-4/Jaspar

Match Rank:7
Score:0.75
Offset:-4
Orientation:reverse strand
Alignment:----AGCAGTTG-----
NNNNAGCAGGTGNTATT

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:8
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-AGCAGTTG-
TGGCAGTTGG

MA0545.1_HLH-1/Jaspar

Match Rank:9
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-AGCAGTTG--
GAACAGCTGTC

PB0047.1_Myf6_1/Jaspar

Match Rank:10
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----AGCAGTTG----
GAAGAACAGGTGTCCG