Information for motif4


Reverse Opposite:

p-value:1e-34
log p-value:-8.015e+01
Information Content per bp:1.505
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif14.11%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.74%
Average Position of motif in Targets153.4 +/- 86.5bp
Average Position of motif in Background205.3 +/- 42.5bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0158.1_Rhox11_2/Jaspar

Match Rank:1
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----CGTTGWAA-----
AGGACGCTGTAAAGGGA

Unknown3/Arabidopsis-Promoters/Homer

Match Rank:2
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CGTTGWAA-
CCGGTTTART

PH0077.1_Hoxd12/Jaspar

Match Rank:3
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CGTTGWAA------
CAAGGTCGTAAAATCTT

MA0044.1_HMG-1/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CGTTGWAA--
-GTTGTACTC

MA0318.1_HMRA2/Jaspar

Match Rank:5
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CGTTGWAA-
-CATGTAAT

PH0067.1_Hoxc12/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CGTTGWAA------
TTAGGTCGTAAAATTTC

PH0157.1_Rhox11_1/Jaspar

Match Rank:7
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CGTTGWAA-----
AAGACGCTGTAAAGCGA

PB0194.1_Zbtb12_2/Jaspar

Match Rank:8
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CGTTGWAA-----
AGNGTTCTAATGANN

PH0076.1_Hoxd11/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CGTTGWAA------
TAAGGTCGTAAAATCCT

PB0184.1_Tbp_2/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CGTTGWAA------
CCGATTTAAGCGACC