Information for motif35


Reverse Opposite:

p-value:1e-17
log p-value:-3.930e+01
Information Content per bp:1.664
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif6.62%
Number of Background Sequences with motif3.4
Percentage of Background Sequences with motif1.18%
Average Position of motif in Targets154.4 +/- 71.8bp
Average Position of motif in Background112.3 +/- 53.7bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

AT/dmmpmm(Papatsenko)/fly

Match Rank:1
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TTCGATCCTYCT
ATTCGTTCAT---

ttk/dmmpmm(Papatsenko)/fly

Match Rank:2
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:TTCGATCCTYCT
---GGTCCTGCC

SNF1(MacIsaac)/Yeast

Match Rank:3
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----TTCGATCCTYCT
CCGGGTTCGATCCCCGG

ttk/dmmpmm(SeSiMCMC)/fly

Match Rank:4
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:TTCGATCCTYCT
---GGTCCTGC-

T1ISRE(IRF)/Ifnb-Exp/Homer

Match Rank:5
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---TTCGATCCTYCT
ACTTTCGTTTCT---

PB0034.1_Irf4_1/Jaspar

Match Rank:6
Score:0.57
Offset:-6
Orientation:reverse strand
Alignment:------TTCGATCCTYCT
TNTGGTTTCGATACN---

OPI1/Literature(Harbison)/Yeast

Match Rank:7
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TTCGATCCTYCT
GATTCGA-------

PB0035.1_Irf5_1/Jaspar

Match Rank:8
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----TTCGATCCTYCT
NTGGTTTCGGTTNNN--

PB0033.1_Irf3_1/Jaspar

Match Rank:9
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----TTCGATCCTYCT
CAGTTTCGNTTCTN--

ttk/dmmpmm(Noyes)/fly

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:TTCGATCCTYCT--
TTNGATTATCCTTG