Information for motif19


Reverse Opposite:

p-value:1e-23
log p-value:-5.466e+01
Information Content per bp:1.724
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif10.79%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.74%
Average Position of motif in Targets153.7 +/- 87.4bp
Average Position of motif in Background173.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Mad/dmmpmm(SeSiMCMC)/fly

Match Rank:1
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GCCGCGACGSAS
GCGGCGACA---

STP1(MacIsaac)/Yeast

Match Rank:2
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GCCGCGACGSAS
GCGCCGCA------

MA0394.1_STP1/Jaspar

Match Rank:3
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GCCGCGACGSAS
GCGCCGCA------

MA0295.1_FHL1/Jaspar

Match Rank:4
Score:0.61
Offset:5
Orientation:forward strand
Alignment:GCCGCGACGSAS-
-----GACGCAAA

Mad/dmmpmm(Bigfoot)/fly

Match Rank:5
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GCCGCGACGSAS
CGCGGCGCCAG--

SWI4/SWI4_YPD/29-SWI4,29-SWI6(Harbison)/Yeast

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GCCGCGACGSAS
GACGCGAAA---

SWI6(MacIsaac)/Yeast

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GCCGCGACGSAS
GACGCG------

SUT1/SUT1_YPD/[](Harbison)/Yeast

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GCCGCGACGSAS
GCGGGGCCGG--

SWI6/SWI6_YPD/9-SWI4,9-SWI6(Harbison)/Yeast

Match Rank:9
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GCCGCGACGSAS
-ACGCGAAA---

PB0179.1_Sp100_2/Jaspar

Match Rank:10
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----GCCGCGACGSAS
NNTTTANNCGACGNA-