Homer de novo Motif Results (Motifs/H3K4me3-Input.CB/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 190
Total background sequences = 155
* - possible false positive

Rank	Motif	P-value	log P-pvalue	% of Targets	% of Background	STD(Bg STD)	Best Match/Details	Motif File
1		1e-53	-1.227e+02	23.16%	0.86%	86.5bp (5.6bp)	UME1/UME1_YPD/[](Harbison)/Yeast(0.663) More Information \| Similar Motifs Found	motif file (matrix)
2		1e-39	-8.999e+01	22.63%	1.61%	81.3bp (36.0bp)	CHR/Cell-Cycle-Exp/Homer(0.660) More Information \| Similar Motifs Found	motif file (matrix)
3		1e-37	-8.578e+01	17.89%	1.27%	87.0bp (70.2bp)	MA0394.1_STP1/Jaspar(0.638) More Information \| Similar Motifs Found	motif file (matrix)
4		1e-37	-8.578e+01	17.89%	1.23%	87.6bp (0.0bp)	STB4/STB4_YPD/[](Harbison)/Yeast(0.728) More Information \| Similar Motifs Found	motif file (matrix)
5		1e-32	-7.537e+01	16.32%	0.95%	78.0bp (0.0bp)	MA0527.1_ZBTB33/Jaspar(0.758) More Information \| Similar Motifs Found	motif file (matrix)
6		1e-32	-7.537e+01	16.32%	1.02%	97.3bp (0.8bp)	MA0411.1_UPC2/Jaspar(0.553) More Information \| Similar Motifs Found	motif file (matrix)
7		1e-31	-7.197e+01	15.79%	1.25%	80.3bp (58.1bp)	HVH21(HD-KNOTTED)/Hordeum vulgare/AthaMap(0.583) More Information \| Similar Motifs Found	motif file (matrix)
8		1e-31	-7.197e+01	15.79%	0.97%	92.6bp (9.4bp)	CRE(bZIP)/Promoter/Homer(0.866) More Information \| Similar Motifs Found	motif file (matrix)
9		1e-29	-6.893e+01	18.95%	1.79%	94.6bp (63.5bp)	RLR1?/SacCer-Promoters/Homer(0.818) More Information \| Similar Motifs Found	motif file (matrix)
10		1e-29	-6.861e+01	15.26%	0.82%	82.1bp (45.8bp)	MA0581.1_LEC2/Jaspar(0.837) More Information \| Similar Motifs Found	motif file (matrix)
11		1e-28	-6.529e+01	14.74%	0.71%	78.1bp (34.3bp)	NDD1(MacIsaac)/Yeast(0.677) More Information \| Similar Motifs Found	motif file (matrix)
12		1e-25	-5.878e+01	13.68%	1.09%	102.9bp (28.5bp)	AtMYB15(MYB)/Arabidopsis thaliana/AthaMap(0.725) More Information \| Similar Motifs Found	motif file (matrix)
13		1e-25	-5.878e+01	13.68%	0.68%	88.8bp (0.0bp)	Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer(0.740) More Information \| Similar Motifs Found	motif file (matrix)
14		1e-24	-5.559e+01	13.16%	1.02%	79.8bp (0.0bp)	PB0203.1_Zfp691_2/Jaspar(0.707) More Information \| Similar Motifs Found	motif file (matrix)
15		1e-24	-5.559e+01	13.16%	0.49%	85.1bp (0.0bp)	PB0095.1_Zfp161_1/Jaspar(0.850) More Information \| Similar Motifs Found	motif file (matrix)
16		1e-24	-5.559e+01	13.16%	0.58%	94.7bp (12.7bp)	MA0300.1_GAT1/Jaspar(0.914) More Information \| Similar Motifs Found	motif file (matrix)
17		1e-23	-5.488e+01	16.32%	1.63%	65.0bp (22.5bp)	PB0181.1_Spdef_2/Jaspar(0.644) More Information \| Similar Motifs Found	motif file (matrix)
18		1e-22	-5.245e+01	12.63%	0.99%	89.5bp (45.2bp)	SWI5/Literature(Harbison)/Yeast(0.728) More Information \| Similar Motifs Found	motif file (matrix)
19		1e-22	-5.245e+01	12.63%	1.20%	81.0bp (45.1bp)	MA0398.1_SUM1/Jaspar(0.739) More Information \| Similar Motifs Found	motif file (matrix)
20		1e-20	-4.630e+01	11.58%	1.02%	95.3bp (0.0bp)	MA0006.1_Arnt::Ahr/Jaspar(0.724) More Information \| Similar Motifs Found	motif file (matrix)
21		1e-20	-4.630e+01	11.58%	1.24%	75.8bp (54.7bp)	MA0507.1_POU2F2/Jaspar(0.763) More Information \| Similar Motifs Found	motif file (matrix)
22		1e-19	-4.432e+01	14.21%	1.80%	84.0bp (51.2bp)	Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer(0.726) More Information \| Similar Motifs Found	motif file (matrix)
23		1e-19	-4.432e+01	14.21%	1.75%	69.0bp (80.7bp)	SFP1/SacCer-Promoters/Homer(0.681) More Information \| Similar Motifs Found	motif file (matrix)
24		1e-18	-4.329e+01	11.05%	0.50%	91.7bp (0.0bp)	SWI4/SWI4_YPD/29-SWI4,29-SWI6(Harbison)/Yeast(0.759) More Information \| Similar Motifs Found	motif file (matrix)
25		1e-18	-4.329e+01	11.05%	1.23%	80.9bp (47.0bp)	MA0020.1_Dof2/Jaspar(0.762) More Information \| Similar Motifs Found	motif file (matrix)
26		1e-17	-4.035e+01	10.53%	1.05%	89.6bp (74.5bp)	MA0260.1_che-1/Jaspar(0.745) More Information \| Similar Motifs Found	motif file (matrix)
27		1e-17	-3.929e+01	13.16%	1.85%	94.0bp (13.6bp)	MA0411.1_UPC2/Jaspar(0.733) More Information \| Similar Motifs Found	motif file (matrix)
28		1e-16	-3.878e+01	15.26%	2.12%	79.6bp (28.7bp)	YAP5(MacIsaac)/Yeast(0.728) More Information \| Similar Motifs Found	motif file (matrix)
29		1e-16	-3.745e+01	10.00%	0.54%	94.8bp (24.6bp)	SPT23/SPT23_YPD/[](Harbison)/Yeast(0.750) More Information \| Similar Motifs Found	motif file (matrix)
30		1e-16	-3.745e+01	10.00%	1.24%	72.4bp (61.3bp)	MA0297.1_FKH2/Jaspar(0.693) More Information \| Similar Motifs Found	motif file (matrix)
31		1e-16	-3.745e+01	10.00%	1.15%	74.0bp (0.0bp)	brk/dmmpmm(Bergman)/fly(0.728) More Information \| Similar Motifs Found	motif file (matrix)
32		1e-15	-3.657e+01	14.74%	2.42%	82.1bp (81.0bp)	EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer(0.815) More Information \| Similar Motifs Found	motif file (matrix)
33		1e-15	-3.541e+01	16.32%	2.58%	93.7bp (47.6bp)	MA0133.1_BRCA1/Jaspar(0.678) More Information \| Similar Motifs Found	motif file (matrix)
34		1e-15	-3.461e+01	9.47%	0.98%	81.8bp (21.5bp)	MA0485.1_Hoxc9/Jaspar(0.626) More Information \| Similar Motifs Found	motif file (matrix)
35		1e-14	-3.444e+01	12.11%	1.73%	79.8bp (35.7bp)	pan/dmmpmm(Down)/fly(0.772) More Information \| Similar Motifs Found	motif file (matrix)
36		1e-14	-3.444e+01	12.11%	1.93%	93.6bp (59.5bp)	ovo/dmmpmm(Bigfoot)/fly(0.807) More Information \| Similar Motifs Found	motif file (matrix)
37		1e-14	-3.440e+01	14.21%	1.98%	89.7bp (50.4bp)	MA0282.1_CEP3/Jaspar(0.715) More Information \| Similar Motifs Found	motif file (matrix)
38		1e-14	-3.440e+01	14.21%	2.49%	92.6bp (46.1bp)	TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer(0.709) More Information \| Similar Motifs Found	motif file (matrix)
39		1e-13	-3.184e+01	8.95%	1.17%	79.7bp (0.0bp)	ABF1/SacCer-Promoters/Homer(0.643) More Information \| Similar Motifs Found	motif file (matrix)
40		1e-13	-3.184e+01	8.95%	0.24%	81.2bp (0.0bp)	PB0129.1_Glis2_2/Jaspar(0.830) More Information \| Similar Motifs Found	motif file (matrix)
41		1e-13	-3.019e+01	13.16%	2.46%	102.0bp (41.4bp)	MA0262.1_mab-3/Jaspar(0.743) More Information \| Similar Motifs Found	motif file (matrix)
42		1e-12	-2.815e+01	12.63%	2.29%	85.6bp (70.1bp)	MA0288.1_CUP9/Jaspar(0.717) More Information \| Similar Motifs Found	motif file (matrix)
43 *		1e-10	-2.453e+01	20.00%	5.81%	88.9bp (38.6bp)	MA0130.1_ZNF354C/Jaspar(0.690) More Information \| Similar Motifs Found	motif file (matrix)
44 *		1e-10	-2.422e+01	11.58%	2.37%	81.2bp (19.7bp)	Adf1/dmmpmm(Pollard)/fly(0.749) More Information \| Similar Motifs Found	motif file (matrix)
45 *		1e-7	-1.657e+01	18.95%	7.48%	91.4bp (54.3bp)	MA0463.1_Bcl6/Jaspar(0.762) More Information \| Similar Motifs Found	motif file (matrix)
46 *		1e4	1.000e+01	12.11%	0.73%	87.7bp (47.0bp)	MBP1/MBP1_H2O2Hi/[](Harbison)/Yeast(0.790) More Information \| Similar Motifs Found	motif file (matrix)