Information for motif9


Reverse Opposite:

p-value:1e-29
log p-value:-6.893e+01
Information Content per bp:1.443
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif18.95%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif1.79%
Average Position of motif in Targets158.8 +/- 94.6bp
Average Position of motif in Background208.3 +/- 63.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RLR1?/SacCer-Promoters/Homer

Match Rank:1
Score:0.82
Offset:-2
Orientation:forward strand
Alignment:--KTTCTCTTTT
WTTTTCYYTTTT

MA0537.1_BLMP-1/Jaspar

Match Rank:2
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-KTTCTCTTTT
TTTTCNCTTTT

tll/dmmpmm(Down)/fly

Match Rank:3
Score:0.73
Offset:1
Orientation:forward strand
Alignment:KTTCTCTTTT-
-TTNACTTTTT

MA0277.1_AZF1/Jaspar

Match Rank:4
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:KTTCTCTTTT-
--TTTCTTTTT

SeqBias: polyA-repeat

Match Rank:5
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:KTTCTCTTTT
TTTTTTTTTT

MA0508.1_PRDM1/Jaspar

Match Rank:6
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----KTTCTCTTTT-
TCACTTTCACTTTCN

MA0559.1_PI/Jaspar

Match Rank:7
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-KTTCTCTTTT---
TTTTCCTTTTTTGG

PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--KTTCTCTTTT
ACTTTCACTTTC

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:9
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--KTTCTCTTTT
ACTTTCACTTTC

MA0459.1_tll/Jaspar

Match Rank:10
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:KTTCTCTTTT
TTTGACTTTT