Information for motif28


Reverse Opposite:

p-value:1e-22
log p-value:-5.224e+01
Information Content per bp:1.739
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif5.15%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.38%
Average Position of motif in Targets119.7 +/- 68.9bp
Average Position of motif in Background206.6 +/- 22.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:1
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--AATTTGACACGC-
NNAATTAGTCACGGT

MA0222.1_exd/Jaspar

Match Rank:2
Score:0.72
Offset:1
Orientation:forward strand
Alignment:AATTTGACACGC
-TTTTGACA---

exd/dmmpmm(Noyes_hd)/fly

Match Rank:3
Score:0.70
Offset:1
Orientation:forward strand
Alignment:AATTTGACACGC
-TTTTGACAAA-

CG11617/dmmpmm(Noyes_hd)/fly

Match Rank:4
Score:0.69
Offset:1
Orientation:forward strand
Alignment:AATTTGACACGC
-ATTTAACATA-

MA0408.1_TOS8/Jaspar

Match Rank:5
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:AATTTGACACGC
--TTTGACAG--

Achi/dmmpmm(Noyes_hd)/fly

Match Rank:6
Score:0.68
Offset:1
Orientation:forward strand
Alignment:AATTTGACACGC
-NTTTGACAGC-

Six4/dmmpmm(Noyes_hd)/fly

Match Rank:7
Score:0.67
Offset:1
Orientation:forward strand
Alignment:AATTTGACACGC
-ATTTGATACC-

prd/dmmpmm(Noyes)/fly

Match Rank:8
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AATTTGACACGC-
AATCCGTCACGCT

Vis/dmmpmm(Noyes_hd)/fly

Match Rank:9
Score:0.64
Offset:1
Orientation:forward strand
Alignment:AATTTGACACGC
-ANNTGACAGN-

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:10
Score:0.62
Offset:7
Orientation:reverse strand
Alignment:AATTTGACACGC-
-------CACGCA