Information for motif42


Reverse Opposite:

p-value:1e-10
log p-value:-2.372e+01
Information Content per bp:1.401
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif12.45%
Number of Background Sequences with motif5.1
Percentage of Background Sequences with motif3.01%
Average Position of motif in Targets132.1 +/- 86.7bp
Average Position of motif in Background204.9 +/- 55.2bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0261.1_lin-14/Jaspar

Match Rank:1
Score:0.61
Offset:6
Orientation:forward strand
Alignment:GTTTWCGAACGT
------GAACAC

MA0261.1_lin-14/Jaspar

Match Rank:2
Score:0.61
Offset:6
Orientation:forward strand
Alignment:GTTTWCGAACGT
------GAACAC

MA0131.1_HINFP/Jaspar

Match Rank:3
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:GTTTWCGAACGT--
----GCGGACGTTN

PH0048.1_Hoxa13/Jaspar

Match Rank:4
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GTTTWCGAACGT-
ANATTTTACGAGNNNN

HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:5
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:GTTTWCGAACGT-
-----BGCACGTA

PH0077.1_Hoxd12/Jaspar

Match Rank:6
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----GTTTWCGAACGT-
NNNATTTTACGACNNTN

PH0068.1_Hoxc13/Jaspar

Match Rank:7
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GTTTWCGAACGT-
NAATTTTACGAGNTNN

PH0067.1_Hoxc12/Jaspar

Match Rank:8
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----GTTTWCGAACGT-
GNNNTTTTACGACCTNA

YER051W(MacIsaac)/Yeast

Match Rank:9
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GTTTWCGAACGT
---TTCGAA---

OsbHLH66(bHLH)/Oryza sativa/AthaMap

Match Rank:10
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GTTTWCGAACGT----
---TNCGCACGTGCNN