Information for motif9


Reverse Opposite:

p-value:1e-31
log p-value:-7.356e+01
Information Content per bp:1.678
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif13.28%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif1.17%
Average Position of motif in Targets148.5 +/- 87.0bp
Average Position of motif in Background252.9 +/- 18.8bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---AGAKCCTT
AAGATATCCTT

MA0293.1_ECM23/Jaspar

Match Rank:2
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--AGAKCCTT-
AAAGATCTAAA

MA0121.1_ARR10/Jaspar

Match Rank:3
Score:0.68
Offset:0
Orientation:forward strand
Alignment:AGAKCCTT
AGATCCGC

MA0302.1_GAT4/Jaspar

Match Rank:4
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--AGAKCCTT-
AAAGATCTAAA

ARR10(GARP)/Arabidopsis thaliana/AthaMap

Match Rank:5
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----AGAKCCTT
GCGAAGATCCGC

MA0389.1_SRD1/Jaspar

Match Rank:6
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--AGAKCCTT
GTAGATCT--

ZmHOX2a(2)(HD-HOX)/Zea mays/AthaMap

Match Rank:7
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-AGAKCCTT
CAGATCA--

PB0181.1_Spdef_2/Jaspar

Match Rank:8
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----AGAKCCTT----
GATAACATCCTAGTAG

MA0301.1_GAT3/Jaspar

Match Rank:9
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---AGAKCCTT
NNTAGATCT--

ttk/dmmpmm(Pollard)/fly

Match Rank:10
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AGAKCCTT--
CAAGGTCCTGGC