Information for motif2


Reverse Opposite:

p-value:1e-34
log p-value:-7.862e+01
Information Content per bp:1.543
Number of Target Sequences with motif39.0
Percentage of Target Sequences with motif18.40%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif1.19%
Average Position of motif in Targets143.2 +/- 82.2bp
Average Position of motif in Background149.4 +/- 58.1bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0401.1_SWI4/Jaspar

Match Rank:1
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GHCGCRAATSRR
-ACGCGAAA---

MA0158.1_HOXA5/Jaspar

Match Rank:2
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GHCGCRAATSRR
--CACTAATT--

STB1/STB1_YPD/1-SWI4,1-SWI6(Harbison)/Yeast

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GHCGCRAATSRR
AAACGCGAAA---

onecut/dmmpmm(Noyes_hd)/fly

Match Rank:4
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:GHCGCRAATSRR--
----CAAATCAANN

SWI4/SWI4_YPD/29-SWI4,29-SWI6(Harbison)/Yeast

Match Rank:5
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GHCGCRAATSRR
GACGCGAAA---

NFY(CCAAT)/Promoter/Homer

Match Rank:6
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GHCGCRAATSRR
--AGCCAATCGG

MA0235.1_onecut/Jaspar

Match Rank:7
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:GHCGCRAATSRR
-----AAATCAA

MA0315.1_HAP4/Jaspar

Match Rank:8
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GHCGCRAATSRR------
---ACCAATCAGAGGCGA

MA0502.1_NFYB/Jaspar

Match Rank:9
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GHCGCRAATSRR
AAATGGACCAATCAG

HAP4(MacIsaac)/Yeast

Match Rank:10
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GHCGCRAATSRR------
---ACCAATCAGNNNCGA