Information for motif18


Reverse Opposite:

p-value:1e-22
log p-value:-5.245e+01
Information Content per bp:1.699
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif12.63%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.99%
Average Position of motif in Targets160.8 +/- 89.5bp
Average Position of motif in Background93.6 +/- 45.2bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SWI5/Literature(Harbison)/Yeast

Match Rank:1
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GGCTGGCAAT
GGCTGA----

MA0267.1_ACE2/Jaspar

Match Rank:2
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GGCTGGCAAT
TGCTGGT---

SOK2(MacIsaac)/Yeast

Match Rank:3
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GGCTGGCAAT
-GCAGGCAA-

PB0029.1_Hic1_1/Jaspar

Match Rank:4
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----GGCTGGCAAT--
NGTAGGTTGGCATNNN

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:GGCTGGCAAT
-CTTGGCAA-

SWI5(MacIsaac)/Yeast

Match Rank:6
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GGCTGGCAAT
TGCTGGTT--

MA0402.1_SWI5/Jaspar

Match Rank:7
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GGCTGGCAAT
TGCTGGTT--

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GGCTGGCAAT
NGCTN-----

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:9
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GGCTGGCAAT--
GSCTGTCACTCA

CRZ1(MacIsaac)/Yeast

Match Rank:10
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GGCTGGCAAT
GAGGCTG-----