Information for motif4


Reverse Opposite:

p-value:1e-20
log p-value:-4.812e+01
Information Content per bp:1.822
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif15.15%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif1.02%
Average Position of motif in Targets140.4 +/- 71.9bp
Average Position of motif in Background189.0 +/- 90.3bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

GAT3(MacIsaac)/Yeast

Match Rank:1
Score:0.78
Offset:0
Orientation:forward strand
Alignment:AKACCATGAT
ATAACATG--

PH0086.1_Irx5/Jaspar

Match Rank:2
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---AKACCATGAT----
ANTNNTACATGTANNTN

PH0085.1_Irx4/Jaspar

Match Rank:3
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---AKACCATGAT----
NNTTTTACATGTANNNT

sna/dmmpmm(Bigfoot)/fly

Match Rank:4
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:AKACCATGAT
-CCACCTGNT

MA0328.1_MATALPHA2/Jaspar

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AKACCATGAT
AATTACATG--

PH0084.1_Irx3_2/Jaspar

Match Rank:6
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---AKACCATGAT----
NNTATTACATGTANNNT

MA0089.1_NFE2L1::MafG/Jaspar

Match Rank:7
Score:0.59
Offset:4
Orientation:forward strand
Alignment:AKACCATGAT
----CATGAC

PH0083.1_Irx3_1/Jaspar

Match Rank:8
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---AKACCATGAT----
ANTATTACATGTANNNN

YAP5(MacIsaac)/Yeast

Match Rank:9
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:AKACCATGAT-
-----ATGCTT

ara/dmmpmm(Noyes_hd)/fly

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AKACCATGAT
AAATAACAAA--