Homer Known Motif Enrichment Results (Motifs.High.WT-Specific)

Homer de novo Motif Results
Gene Ontology Enrichment Results
Known Motif Enrichment Results (txt file)
Total Target Sequences = 14326, Total Background Sequences = 12427
RankMotifNameP-valuelog P-pvalueq-value (Benjamini)# Target Sequences with Motif% of Targets Sequences with Motif# Background Sequences with Motif% of Background Sequences with MotifMotif File PDF
1FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer1e-298-6.877e+020.00002815.019.65%1175.69.46%motif file (matrix) pdf
2FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer1e-284-6.556e+020.00002383.016.64%935.77.53%motif file (matrix) pdf
3Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer1e-269-6.213e+020.00002065.014.42%771.46.21%motif file (matrix) pdf
4Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer1e-145-3.362e+020.00002391.016.69%1209.49.74%motif file (matrix) pdf
5FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer1e-125-2.892e+020.00001044.07.29%398.13.20%motif file (matrix) pdf
6CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer1e-119-2.746e+020.0000536.03.74%141.61.14%motif file (matrix) pdf
7BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer1e-92-2.134e+020.0000614.04.29%207.31.67%motif file (matrix) pdf
8Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer1e-89-2.061e+020.00001488.010.39%746.86.01%motif file (matrix) pdf
9Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer1e-83-1.920e+020.00002644.018.46%1583.112.75%motif file (matrix) pdf
10Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer1e-82-1.901e+020.00001871.013.06%1028.68.28%motif file (matrix) pdf
11Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer1e-77-1.774e+020.00003294.022.99%2100.616.91%motif file (matrix) pdf
12Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer1e-76-1.762e+020.00001222.08.53%603.14.86%motif file (matrix) pdf
13Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer1e-74-1.718e+020.00001725.012.04%951.97.66%motif file (matrix) pdf
14Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer1e-69-1.601e+020.00001084.07.57%530.54.27%motif file (matrix) pdf
15GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer1e-58-1.340e+020.00002407.016.80%1512.112.17%motif file (matrix) pdf
16Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer1e-58-1.336e+020.00003795.026.49%2590.920.86%motif file (matrix) pdf
17Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer1e-53-1.232e+020.00003575.024.96%2442.219.66%motif file (matrix) pdf
18Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer1e-45-1.039e+020.00003014.021.04%2049.116.50%motif file (matrix) pdf
19Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer1e-40-9.326e+010.00002767.019.32%1883.215.16%motif file (matrix) pdf
20Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer1e-34-7.889e+010.00001471.010.27%923.17.43%motif file (matrix) pdf
21Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer1e-31-7.165e+010.00001862.013.00%1236.39.95%motif file (matrix) pdf
22Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer1e-30-7.014e+010.00005889.041.11%4524.336.42%motif file (matrix) pdf
23CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer1e-28-6.483e+010.00003446.024.06%2515.420.25%motif file (matrix) pdf
24Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer1e-27-6.362e+010.00002375.016.58%1659.013.36%motif file (matrix) pdf
25Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer1e-26-6.145e+010.00005812.040.57%4497.536.21%motif file (matrix) pdf
26Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer1e-26-6.122e+010.0000672.04.69%376.23.03%motif file (matrix) pdf
27TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer1e-26-6.089e+010.0000935.06.53%564.84.55%motif file (matrix) pdf
28Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer1e-26-6.004e+010.0000438.03.06%219.31.77%motif file (matrix) pdf
29Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer1e-23-5.467e+010.00001737.012.13%1185.29.54%motif file (matrix) pdf
30Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer1e-22-5.088e+010.0000738.05.15%440.93.55%motif file (matrix) pdf
31Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer1e-20-4.755e+010.0000403.02.81%211.61.70%motif file (matrix) pdf
32Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer1e-18-4.246e+010.00005094.035.56%3983.632.07%motif file (matrix) pdf
33Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer1e-18-4.205e+010.0000509.03.55%292.52.35%motif file (matrix) pdf
34TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer1e-16-3.827e+010.00001195.08.34%812.06.54%motif file (matrix) pdf
35Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer1e-15-3.681e+010.00001223.08.54%838.96.75%motif file (matrix) pdf
36E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer1e-14-3.354e+010.00002447.017.08%1828.114.72%motif file (matrix) pdf
37RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer1e-13-3.206e+010.0000189.01.32%89.90.72%motif file (matrix) pdf
38NFY(CCAAT)/Promoter/Homer1e-13-3.144e+010.0000997.06.96%679.45.47%motif file (matrix) pdf
39Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer1e-13-3.038e+010.00002047.014.29%1517.212.21%motif file (matrix) pdf
40HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer1e-12-2.926e+010.0000667.04.66%433.73.49%motif file (matrix) pdf
41Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer1e-11-2.621e+010.0000344.02.40%202.11.63%motif file (matrix) pdf
42Sp1(Zf)/Promoter/Homer1e-10-2.473e+010.0000434.03.03%270.92.18%motif file (matrix) pdf
43Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer1e-10-2.412e+010.0000154.01.08%75.70.61%motif file (matrix) pdf
44OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer1e-10-2.396e+010.0000220.01.54%119.80.96%motif file (matrix) pdf
45TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer1e-9-2.256e+010.0000159.01.11%80.70.65%motif file (matrix) pdf
46Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer1e-9-2.237e+010.0000205.01.43%111.60.90%motif file (matrix) pdf
47Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer1e-9-2.171e+010.0000537.03.75%354.12.85%motif file (matrix) pdf
48CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer1e-9-2.126e+010.000038.00.27%10.20.08%motif file (matrix) pdf
49Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer1e-8-2.055e+010.0000278.01.94%165.51.33%motif file (matrix) pdf
50MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer1e-8-2.049e+010.00001288.08.99%948.47.64%motif file (matrix) pdf
51GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer1e-8-1.980e+010.0000201.01.40%112.20.90%motif file (matrix) pdf
52X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer1e-8-1.944e+010.0000216.01.51%123.61.00%motif file (matrix) pdf
53Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer1e-8-1.929e+010.0000859.06.00%611.04.92%motif file (matrix) pdf
54KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer1e-8-1.875e+010.00001942.013.56%1489.511.99%motif file (matrix) pdf
55Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer1e-7-1.833e+010.0000212.01.48%122.40.99%motif file (matrix) pdf
56EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer1e-7-1.747e+010.00001648.011.50%1255.310.11%motif file (matrix) pdf
57Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer1e-7-1.655e+010.000038.00.27%12.90.10%motif file (matrix) pdf
58Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer1e-7-1.652e+010.00004165.029.08%3366.827.11%motif file (matrix) pdf
59MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer1e-7-1.640e+010.00001782.012.44%1371.711.04%motif file (matrix) pdf
60NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer1e-6-1.597e+010.00001226.08.56%919.97.41%motif file (matrix) pdf
61Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer1e-6-1.562e+010.0000312.02.18%200.11.61%motif file (matrix) pdf
62REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer1e-6-1.557e+010.000031.00.22%9.30.07%motif file (matrix) pdf
63Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer1e-6-1.425e+010.0000820.05.72%600.24.83%motif file (matrix) pdf
64CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer1e-5-1.271e+010.0000142.00.99%82.70.67%motif file (matrix) pdf
65E-box(HLH)/Promoter/Homer1e-5-1.221e+010.000099.00.69%53.10.43%motif file (matrix) pdf
66GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer1e-5-1.208e+010.0000109.00.76%60.60.49%motif file (matrix) pdf
67Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer1e-5-1.166e+010.0000111.00.77%62.90.51%motif file (matrix) pdf
68EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer1e-4-1.147e+010.0000328.02.29%223.41.80%motif file (matrix) pdf
69PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer1e-4-1.125e+010.0000706.04.93%522.44.21%motif file (matrix) pdf
70E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer1e-4-1.095e+010.00012187.015.27%1745.514.05%motif file (matrix) pdf
71Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer1e-4-9.777e+000.0002238.01.66%160.01.29%motif file (matrix) pdf
72PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer1e-4-9.614e+000.0002119.00.83%71.10.57%motif file (matrix) pdf
73Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer1e-4-9.582e+000.0002187.01.31%121.00.97%motif file (matrix) pdf
74FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer1e-4-9.496e+000.000289.00.62%50.10.40%motif file (matrix) pdf
75ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer1e-3-9.110e+000.0004478.03.34%349.92.82%motif file (matrix) pdf
76TATA-Box(TBP)/Promoter/Homer1e-3-8.612e+000.00061584.011.06%1260.310.15%motif file (matrix) pdf
77GFX(?)/Promoter/Homer1e-3-8.528e+000.00067.00.05%1.90.02%motif file (matrix) pdf
78CHR/Cell-Cycle-Exp/Homer1e-3-8.316e+000.0008683.04.77%518.04.17%motif file (matrix) pdf
79NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer1e-3-8.141e+000.0009656.04.58%497.24.00%motif file (matrix) pdf
80Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer1e-3-7.763e+000.00131077.07.52%845.66.81%motif file (matrix) pdf
81GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer1e-3-7.190e+000.002371.00.50%41.30.33%motif file (matrix) pdf
82Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer1e-3-7.050e+000.0026281.01.96%201.61.62%motif file (matrix) pdf
83PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer1e-2-6.766e+000.0034155.01.08%104.20.84%motif file (matrix) pdf
84MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer1e-2-6.661e+000.0037327.02.28%239.31.93%motif file (matrix) pdf
85Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer1e-2-6.561e+000.0041349.02.44%257.42.07%motif file (matrix) pdf
86TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer1e-2-6.300e+000.0053152.01.06%103.20.83%motif file (matrix) pdf
87Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer1e-2-6.142e+000.0061269.01.88%195.71.58%motif file (matrix) pdf
88Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer1e-2-5.691e+000.00941639.011.44%1333.410.74%motif file (matrix) pdf
89Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer1e-2-5.053e+000.01772136.014.91%1761.214.18%motif file (matrix) pdf
90PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer1e-2-5.052e+000.0177232.01.62%171.01.38%motif file (matrix) pdf
91CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer1e-2-4.960e+000.0190342.02.39%259.72.09%motif file (matrix) pdf
92ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer1e-2-4.878e+000.0204131.00.91%91.70.74%motif file (matrix) pdf
93Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer1e-2-4.740e+000.0231688.04.80%545.64.39%motif file (matrix) pdf