Homer Known Motif Enrichment Results (Motifs/Common.1.5.High)

Homer de novo Motif Results
Gene Ontology Enrichment Results
Known Motif Enrichment Results (txt file)
Total Target Sequences = 5514, Total Background Sequences = 44029
RankMotifNameP-valuelog P-pvalueq-value (Benjamini)# Target Sequences with Motif% of Targets Sequences with Motif# Background Sequences with Motif% of Background Sequences with MotifMotif File PDF
1FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer1e-346-7.989e+020.00001309.023.74%2989.66.79%motif file (matrix) pdf
2FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer1e-329-7.587e+020.00001126.020.42%2336.45.31%motif file (matrix) pdf
3Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer1e-277-6.395e+020.00001023.018.56%2243.95.10%motif file (matrix) pdf
4Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer1e-210-4.849e+020.00001154.020.93%3384.57.69%motif file (matrix) pdf
5FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer1e-143-3.312e+020.0000536.09.72%1149.92.61%motif file (matrix) pdf
6CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer1e-137-3.169e+020.0000377.06.84%603.31.37%motif file (matrix) pdf
7BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer1e-126-2.910e+020.0000494.08.96%1098.22.49%motif file (matrix) pdf
8Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer1e-83-1.926e+020.00001446.026.23%7019.815.95%motif file (matrix) pdf
9Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer1e-78-1.798e+020.0000983.017.83%4226.39.60%motif file (matrix) pdf
10KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer1e-75-1.739e+020.00001574.028.55%8076.618.35%motif file (matrix) pdf
11Sp1(Zf)/Promoter/Homer1e-69-1.589e+020.0000627.011.37%2330.55.29%motif file (matrix) pdf
12GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer1e-68-1.566e+020.0000924.016.76%4070.49.25%motif file (matrix) pdf
13Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer1e-66-1.541e+020.0000710.012.88%2828.96.43%motif file (matrix) pdf
14Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer1e-58-1.354e+020.0000508.09.21%1837.94.17%motif file (matrix) pdf
15Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer1e-57-1.319e+020.0000725.013.15%3091.57.02%motif file (matrix) pdf
16NFY(CCAAT)/Promoter/Homer1e-53-1.233e+020.0000683.012.39%2916.96.63%motif file (matrix) pdf
17Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer1e-51-1.185e+020.0000457.08.29%1671.23.80%motif file (matrix) pdf
18Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer1e-51-1.180e+020.0000626.011.35%2625.25.96%motif file (matrix) pdf
19Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer1e-50-1.157e+020.00001350.024.49%7293.116.57%motif file (matrix) pdf
20Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer1e-50-1.152e+020.00001285.023.31%6858.015.58%motif file (matrix) pdf
21Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer1e-42-9.735e+010.00001574.028.55%9138.320.76%motif file (matrix) pdf
22Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer1e-42-9.712e+010.0000178.03.23%417.60.95%motif file (matrix) pdf
23RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer1e-39-9.183e+010.0000165.02.99%381.40.87%motif file (matrix) pdf
24Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer1e-37-8.643e+010.0000248.04.50%778.71.77%motif file (matrix) pdf
25Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer1e-34-7.966e+010.0000699.012.68%3451.87.84%motif file (matrix) pdf
26Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer1e-33-7.826e+010.00002161.039.20%13821.331.39%motif file (matrix) pdf
27Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer1e-33-7.790e+010.00001138.020.64%6402.014.54%motif file (matrix) pdf
28Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer1e-33-7.621e+010.00002284.041.43%14800.833.62%motif file (matrix) pdf
29Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer1e-32-7.472e+010.0000499.09.05%2260.65.13%motif file (matrix) pdf
30Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer1e-32-7.397e+010.0000325.05.90%1256.22.85%motif file (matrix) pdf
31Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer1e-31-7.314e+010.00001093.019.83%6169.414.01%motif file (matrix) pdf
32X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer1e-30-7.072e+010.0000156.02.83%418.80.95%motif file (matrix) pdf
33CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer1e-29-6.715e+010.00001317.023.89%7848.217.83%motif file (matrix) pdf
34Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer1e-28-6.664e+010.0000160.02.90%453.41.03%motif file (matrix) pdf
35Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer1e-28-6.501e+010.0000599.010.87%2990.96.79%motif file (matrix) pdf
36Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer1e-27-6.390e+010.0000227.04.12%797.41.81%motif file (matrix) pdf
37TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer1e-26-6.169e+010.0000548.09.94%2706.66.15%motif file (matrix) pdf
38Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer1e-24-5.618e+010.0000201.03.65%709.71.61%motif file (matrix) pdf
39Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer1e-23-5.402e+010.0000903.016.38%5184.811.78%motif file (matrix) pdf
40E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer1e-20-4.777e+010.00001206.021.88%7453.716.93%motif file (matrix) pdf
41TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer1e-20-4.749e+010.0000382.06.93%1831.44.16%motif file (matrix) pdf
42Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer1e-20-4.613e+010.0000293.05.31%1305.02.96%motif file (matrix) pdf
43SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer1e-18-4.346e+010.00003009.054.58%21363.148.53%motif file (matrix) pdf
44Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer1e-18-4.345e+010.0000857.015.55%5063.111.50%motif file (matrix) pdf
45Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer1e-18-4.236e+010.00001882.034.14%12609.328.64%motif file (matrix) pdf
46ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer1e-16-3.747e+010.0000504.09.14%2754.36.26%motif file (matrix) pdf
47CRE(bZIP)/Promoter/Homer1e-15-3.510e+010.0000200.03.63%860.91.96%motif file (matrix) pdf
48ETS(ETS)/Promoter/Homer1e-15-3.486e+010.0000332.06.02%1670.13.79%motif file (matrix) pdf
49Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer1e-15-3.477e+010.0000520.09.43%2906.76.60%motif file (matrix) pdf
50Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer1e-14-3.433e+010.0000954.017.30%5952.113.52%motif file (matrix) pdf
51c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer1e-14-3.304e+010.0000200.03.63%879.52.00%motif file (matrix) pdf
52Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer1e-14-3.267e+010.0000519.09.41%2936.36.67%motif file (matrix) pdf
53Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer1e-14-3.225e+010.00002102.038.13%14621.733.21%motif file (matrix) pdf
54GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer1e-12-2.937e+010.0000718.013.02%4385.29.96%motif file (matrix) pdf
55Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer1e-11-2.722e+010.0000834.015.13%5267.911.97%motif file (matrix) pdf
56ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer1e-11-2.716e+010.00001003.018.19%6497.914.76%motif file (matrix) pdf
57MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer1e-11-2.664e+010.0000855.015.51%5434.212.34%motif file (matrix) pdf
58TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer1e-11-2.594e+010.000070.01.27%218.20.50%motif file (matrix) pdf
59Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer1e-10-2.518e+010.0000359.06.51%1989.74.52%motif file (matrix) pdf
60Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer1e-10-2.444e+010.0000572.010.38%3468.57.88%motif file (matrix) pdf
61ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer1e-10-2.412e+010.0000494.08.96%2930.66.66%motif file (matrix) pdf
62EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer1e-10-2.316e+010.0000206.03.74%1023.22.32%motif file (matrix) pdf
63GFY-Staf/Promoters/Homer1e-9-2.296e+010.000064.01.16%204.90.47%motif file (matrix) pdf
64Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer1e-9-2.277e+010.0000136.02.47%600.91.36%motif file (matrix) pdf
65E-box(HLH)/Promoter/Homer1e-9-2.228e+010.000085.01.54%316.30.72%motif file (matrix) pdf
66REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer1e-9-2.221e+010.000026.00.47%44.60.10%motif file (matrix) pdf
67HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer1e-9-2.188e+010.0000221.04.01%1136.02.58%motif file (matrix) pdf
68JunD(bZIP)/K562-JunD-ChIP-Seq/Homer1e-9-2.094e+010.000079.01.43%293.20.67%motif file (matrix) pdf
69CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer1e-9-2.091e+010.000028.00.51%55.00.12%motif file (matrix) pdf
70ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer1e-8-2.066e+010.0000725.013.15%4658.210.58%motif file (matrix) pdf
71Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer1e-8-2.045e+010.0000913.016.56%6040.613.72%motif file (matrix) pdf
72NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer1e-8-1.926e+010.0000568.010.30%3566.18.10%motif file (matrix) pdf
73OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer1e-8-1.887e+010.000073.01.32%275.90.63%motif file (matrix) pdf
74GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer1e-8-1.849e+010.000087.01.58%355.80.81%motif file (matrix) pdf
75FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer1e-7-1.823e+010.000039.00.71%108.70.25%motif file (matrix) pdf
76Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer1e-7-1.790e+010.0000195.03.54%1024.72.33%motif file (matrix) pdf
77GFY(?)/Promoter/Homer1e-7-1.790e+010.000071.01.29%271.10.62%motif file (matrix) pdf
78Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer1e-7-1.779e+010.0000196.03.56%1032.92.35%motif file (matrix) pdf
79NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer1e-7-1.724e+010.0000183.03.32%956.42.17%motif file (matrix) pdf
80NRF1/Promoter/Homer1e-6-1.556e+010.0000197.03.57%1073.22.44%motif file (matrix) pdf
81SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer1e-6-1.535e+010.0000678.012.30%4479.610.18%motif file (matrix) pdf
82EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer1e-6-1.483e+010.0000786.014.26%5294.212.03%motif file (matrix) pdf
83ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer1e-6-1.457e+010.00001034.018.76%7160.716.27%motif file (matrix) pdf
84Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer1e-6-1.406e+010.0000268.04.86%1580.03.59%motif file (matrix) pdf
85Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer1e-6-1.395e+010.0000740.013.42%4985.411.32%motif file (matrix) pdf
86Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer1e-5-1.374e+010.00001407.025.52%10038.622.80%motif file (matrix) pdf
87MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer1e-5-1.371e+010.0000628.011.39%4167.99.47%motif file (matrix) pdf
88PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer1e-5-1.367e+010.000085.01.54%387.80.88%motif file (matrix) pdf
89E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer1e-5-1.338e+010.00001003.018.19%6977.615.85%motif file (matrix) pdf
90Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer1e-5-1.314e+010.00001101.019.97%7730.317.56%motif file (matrix) pdf
91bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer1e-5-1.309e+010.0000192.03.48%1082.72.46%motif file (matrix) pdf
92Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer1e-5-1.294e+010.000073.01.32%323.90.74%motif file (matrix) pdf
93Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer1e-5-1.284e+010.0000124.02.25%639.41.45%motif file (matrix) pdf
94EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer1e-5-1.160e+010.0000806.014.62%5571.012.65%motif file (matrix) pdf
95Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer1e-5-1.159e+010.0000568.010.30%3800.38.63%motif file (matrix) pdf
96PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer1e-4-1.136e+010.0000308.05.59%1923.54.37%motif file (matrix) pdf
97Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer1e-4-1.006e+010.0001275.04.99%1723.93.92%motif file (matrix) pdf
98USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer1e-4-1.002e+010.0001260.04.72%1618.23.68%motif file (matrix) pdf
99Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer1e-4-9.911e+000.0001144.02.61%817.81.86%motif file (matrix) pdf
100E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer1e-4-9.800e+000.0001382.06.93%2500.65.68%motif file (matrix) pdf
101CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer1e-4-9.789e+000.0001295.05.35%1873.74.26%motif file (matrix) pdf
102IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer1e-3-8.668e+000.0004195.03.54%1194.72.71%motif file (matrix) pdf
103ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer1e-3-8.576e+000.000568.01.23%340.30.77%motif file (matrix) pdf
104BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer1e-3-8.302e+000.0006271.04.92%1744.43.96%motif file (matrix) pdf
105EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer1e-3-7.868e+000.0009379.06.87%2545.55.78%motif file (matrix) pdf
106Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer1e-3-7.704e+000.001092.01.67%508.11.15%motif file (matrix) pdf
107Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer1e-3-7.301e+000.001698.01.78%555.91.26%motif file (matrix) pdf
108MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer1e-3-7.144e+000.0018486.08.82%3369.17.65%motif file (matrix) pdf
109GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer1e-2-6.702e+000.002836.00.65%164.10.37%motif file (matrix) pdf
110GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer1e-2-6.501e+000.003451.00.93%259.70.59%motif file (matrix) pdf
111c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer1e-2-6.338e+000.0039292.05.30%1962.84.46%motif file (matrix) pdf
112Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer1e-2-6.273e+000.0041152.02.76%951.12.16%motif file (matrix) pdf
113Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer1e-2-6.160e+000.00461708.030.98%12860.829.21%motif file (matrix) pdf
114GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer1e-2-6.102e+000.004834.00.62%159.00.36%motif file (matrix) pdf
115MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer1e-2-5.984e+000.0054127.02.30%782.91.78%motif file (matrix) pdf
116AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer1e-2-5.956e+000.0055296.05.37%2006.64.56%motif file (matrix) pdf
117NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer1e-2-5.901e+000.005833.00.60%154.30.35%motif file (matrix) pdf
118PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer1e-2-5.757e+000.0066655.011.88%4719.610.72%motif file (matrix) pdf
119Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer1e-2-5.645e+000.0073118.02.14%727.31.65%motif file (matrix) pdf
120n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer1e-2-5.291e+000.0103357.06.48%2488.05.65%motif file (matrix) pdf
121Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer1e-2-5.254e+000.0106179.03.25%1174.52.67%motif file (matrix) pdf
122EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer1e-2-5.143e+000.0118347.06.29%2420.75.50%motif file (matrix) pdf
123Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer1e-2-5.092e+000.0123105.01.90%649.61.48%motif file (matrix) pdf
124Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer1e-2-5.011e+000.013210.00.18%31.30.07%motif file (matrix) pdf
125E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer1e-2-4.819e+000.0159429.07.78%3054.06.94%motif file (matrix) pdf
126Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer1e-2-4.775e+000.01657.00.13%18.40.04%motif file (matrix) pdf