| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
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| 1 |  | CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer | 1e-241 | -5.553e+02 | 0.0000 | 489.0 | 7.99% | 493.5 | 1.13% | motif file (matrix) |
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| 2 |  | BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-178 | -4.109e+02 | 0.0000 | 514.0 | 8.39% | 775.5 | 1.78% | motif file (matrix) |
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| 3 |  | FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-140 | -3.245e+02 | 0.0000 | 1112.0 | 18.16% | 3515.7 | 8.05% | motif file (matrix) |
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| 4 |  | FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer | 1e-132 | -3.054e+02 | 0.0000 | 936.0 | 15.29% | 2774.2 | 6.36% | motif file (matrix) |
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| 5 |  | Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer | 1e-123 | -2.836e+02 | 0.0000 | 846.0 | 13.82% | 2461.2 | 5.64% | motif file (matrix) |
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| 6 |  | Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer | 1e-83 | -1.920e+02 | 0.0000 | 1005.0 | 16.41% | 3781.9 | 8.66% | motif file (matrix) |
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| 7 |  | Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer | 1e-68 | -1.567e+02 | 0.0000 | 1467.0 | 23.96% | 6707.7 | 15.37% | motif file (matrix) |
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| 8 |  | TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer | 1e-62 | -1.434e+02 | 0.0000 | 764.0 | 12.48% | 2868.3 | 6.57% | motif file (matrix) |
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| 9 |  | TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer | 1e-60 | -1.397e+02 | 0.0000 | 587.0 | 9.59% | 1993.5 | 4.57% | motif file (matrix) |
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| 10 |  | Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer | 1e-56 | -1.304e+02 | 0.0000 | 1253.0 | 20.46% | 5726.1 | 13.12% | motif file (matrix) |
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| 11 |  | Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer | 1e-52 | -1.209e+02 | 0.0000 | 794.0 | 12.97% | 3208.3 | 7.35% | motif file (matrix) |
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| 12 |  | FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer | 1e-52 | -1.205e+02 | 0.0000 | 400.0 | 6.53% | 1210.6 | 2.77% | motif file (matrix) |
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| 13 |  | Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer | 1e-48 | -1.123e+02 | 0.0000 | 1512.0 | 24.69% | 7514.9 | 17.22% | motif file (matrix) |
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| 14 |  | Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer | 1e-40 | -9.357e+01 | 0.0000 | 551.0 | 9.00% | 2132.4 | 4.89% | motif file (matrix) |
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| 15 |  | Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer | 1e-38 | -8.918e+01 | 0.0000 | 504.0 | 8.23% | 1920.3 | 4.40% | motif file (matrix) |
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| 16 |  | Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer | 1e-36 | -8.446e+01 | 0.0000 | 737.0 | 12.04% | 3237.2 | 7.42% | motif file (matrix) |
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| 17 |  | GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-36 | -8.327e+01 | 0.0000 | 997.0 | 16.28% | 4767.1 | 10.92% | motif file (matrix) |
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| 18 |  | Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer | 1e-22 | -5.113e+01 | 0.0000 | 366.0 | 5.98% | 1509.9 | 3.46% | motif file (matrix) |
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| 19 |  | Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer | 1e-20 | -4.680e+01 | 0.0000 | 133.0 | 2.17% | 373.8 | 0.86% | motif file (matrix) |
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| 20 |  | RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer | 1e-19 | -4.446e+01 | 0.0000 | 122.0 | 1.99% | 336.9 | 0.77% | motif file (matrix) |
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| 21 |  | X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-19 | -4.430e+01 | 0.0000 | 136.0 | 2.22% | 398.5 | 0.91% | motif file (matrix) |
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| 22 |  | Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer | 1e-18 | -4.232e+01 | 0.0000 | 223.0 | 3.64% | 829.6 | 1.90% | motif file (matrix) |
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| 23 |  | REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer | 1e-17 | -4.138e+01 | 0.0000 | 38.0 | 0.62% | 42.1 | 0.10% | motif file (matrix) |
pdf |
| 24 |  | Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer | 1e-16 | -3.737e+01 | 0.0000 | 91.0 | 1.49% | 235.9 | 0.54% | motif file (matrix) |
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| 25 |  | Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-15 | -3.665e+01 | 0.0000 | 567.0 | 9.26% | 2844.1 | 6.52% | motif file (matrix) |
pdf |
| 26 |  | Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-15 | -3.661e+01 | 0.0000 | 200.0 | 3.27% | 755.0 | 1.73% | motif file (matrix) |
pdf |
| 27 |  | Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer | 1e-12 | -2.991e+01 | 0.0000 | 885.0 | 14.45% | 4958.2 | 11.36% | motif file (matrix) |
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| 28 |  | Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer | 1e-12 | -2.807e+01 | 0.0000 | 574.0 | 9.37% | 3033.1 | 6.95% | motif file (matrix) |
pdf |
| 29 |  | Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer | 1e-11 | -2.756e+01 | 0.0000 | 1310.0 | 21.39% | 7798.7 | 17.87% | motif file (matrix) |
pdf |
| 30 |  | Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer | 1e-11 | -2.637e+01 | 0.0000 | 1177.0 | 19.22% | 6951.1 | 15.93% | motif file (matrix) |
pdf |
| 31 |  | Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer | 1e-11 | -2.635e+01 | 0.0000 | 279.0 | 4.56% | 1289.1 | 2.95% | motif file (matrix) |
pdf |
| 32 |  | TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer | 1e-10 | -2.522e+01 | 0.0000 | 91.0 | 1.49% | 293.0 | 0.67% | motif file (matrix) |
pdf |
| 33 |  | KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer | 1e-9 | -2.130e+01 | 0.0000 | 1041.0 | 17.00% | 6201.6 | 14.21% | motif file (matrix) |
pdf |
| 34 |  | Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer | 1e-8 | -2.044e+01 | 0.0000 | 335.0 | 5.47% | 1705.8 | 3.91% | motif file (matrix) |
pdf |
| 35 |  | BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer | 1e-7 | -1.775e+01 | 0.0000 | 356.0 | 5.81% | 1881.2 | 4.31% | motif file (matrix) |
pdf |
| 36 |  | Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer | 1e-7 | -1.767e+01 | 0.0000 | 149.0 | 2.43% | 655.6 | 1.50% | motif file (matrix) |
pdf |
| 37 |  | Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-7 | -1.748e+01 | 0.0000 | 2416.0 | 39.46% | 15750.7 | 36.09% | motif file (matrix) |
pdf |
| 38 |  | Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer | 1e-7 | -1.679e+01 | 0.0000 | 358.0 | 5.85% | 1912.2 | 4.38% | motif file (matrix) |
pdf |
| 39 |  | Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer | 1e-6 | -1.473e+01 | 0.0000 | 85.0 | 1.39% | 336.8 | 0.77% | motif file (matrix) |
pdf |
| 40 |  | NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer | 1e-6 | -1.449e+01 | 0.0000 | 614.0 | 10.03% | 3601.3 | 8.25% | motif file (matrix) |
pdf |
| 41 |  | Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer | 1e-6 | -1.403e+01 | 0.0000 | 133.0 | 2.17% | 607.4 | 1.39% | motif file (matrix) |
pdf |
| 42 |  | Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer | 1e-5 | -1.357e+01 | 0.0000 | 184.0 | 3.01% | 910.7 | 2.09% | motif file (matrix) |
pdf |
| 43 |  | Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer | 1e-5 | -1.347e+01 | 0.0000 | 1114.0 | 18.19% | 6964.1 | 15.96% | motif file (matrix) |
pdf |
| 44 |  | AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-5 | -1.336e+01 | 0.0000 | 402.0 | 6.57% | 2264.1 | 5.19% | motif file (matrix) |
pdf |
| 45 |  | Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer | 1e-5 | -1.310e+01 | 0.0000 | 124.0 | 2.03% | 567.2 | 1.30% | motif file (matrix) |
pdf |
| 46 |  | Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer | 1e-5 | -1.289e+01 | 0.0000 | 2347.0 | 38.33% | 15502.4 | 35.52% | motif file (matrix) |
pdf |
| 47 |  | CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer | 1e-5 | -1.282e+01 | 0.0000 | 27.0 | 0.44% | 68.8 | 0.16% | motif file (matrix) |
pdf |
| 48 |  | Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer | 1e-5 | -1.249e+01 | 0.0000 | 130.0 | 2.12% | 609.8 | 1.40% | motif file (matrix) |
pdf |
| 49 |  | MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer | 1e-5 | -1.196e+01 | 0.0000 | 573.0 | 9.36% | 3410.5 | 7.81% | motif file (matrix) |
pdf |
| 50 |  | Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer | 1e-5 | -1.183e+01 | 0.0000 | 1278.0 | 20.87% | 8151.8 | 18.68% | motif file (matrix) |
pdf |
| 51 |  | GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer | 1e-4 | -1.141e+01 | 0.0001 | 248.0 | 4.05% | 1338.0 | 3.07% | motif file (matrix) |
pdf |
| 52 |  | Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-4 | -1.125e+01 | 0.0001 | 136.0 | 2.22% | 661.9 | 1.52% | motif file (matrix) |
pdf |
| 53 |  | GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-4 | -1.122e+01 | 0.0001 | 76.0 | 1.24% | 321.0 | 0.74% | motif file (matrix) |
pdf |
| 54 |  | SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer | 1e-4 | -1.099e+01 | 0.0001 | 3127.0 | 51.07% | 21130.9 | 48.41% | motif file (matrix) |
pdf |
| 55 |  | CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer | 1e-4 | -1.094e+01 | 0.0001 | 1285.0 | 20.99% | 8242.1 | 18.88% | motif file (matrix) |
pdf |
| 56 |  | Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer | 1e-4 | -1.043e+01 | 0.0001 | 963.0 | 15.73% | 6073.6 | 13.92% | motif file (matrix) |
pdf |
| 57 |  | EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer | 1e-4 | -9.895e+00 | 0.0002 | 181.0 | 2.96% | 954.1 | 2.19% | motif file (matrix) |
pdf |
| 58 |  | c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-4 | -9.596e+00 | 0.0003 | 183.0 | 2.99% | 972.5 | 2.23% | motif file (matrix) |
pdf |
| 59 |  | GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer | 1e-4 | -9.394e+00 | 0.0003 | 82.0 | 1.34% | 373.2 | 0.86% | motif file (matrix) |
pdf |
| 60 |  | Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer | 1e-4 | -9.391e+00 | 0.0003 | 646.0 | 10.55% | 3984.8 | 9.13% | motif file (matrix) |
pdf |
| 61 |  | Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer | 1e-3 | -9.114e+00 | 0.0004 | 369.0 | 6.03% | 2166.2 | 4.96% | motif file (matrix) |
pdf |
| 62 |  | Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-3 | -9.005e+00 | 0.0005 | 194.0 | 3.17% | 1052.1 | 2.41% | motif file (matrix) |
pdf |
| 63 |  | HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer | 1e-3 | -8.451e+00 | 0.0008 | 331.0 | 5.41% | 1939.4 | 4.44% | motif file (matrix) |
pdf |
| 64 |  | RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer | 1e-3 | -8.094e+00 | 0.0012 | 456.0 | 7.45% | 2770.9 | 6.35% | motif file (matrix) |
pdf |
| 65 |  | Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer | 1e-3 | -7.783e+00 | 0.0016 | 1480.0 | 24.17% | 9763.5 | 22.37% | motif file (matrix) |
pdf |
| 66 |  | E-box(HLH)/Promoter/Homer | 1e-3 | -7.781e+00 | 0.0016 | 54.0 | 0.88% | 234.7 | 0.54% | motif file (matrix) |
pdf |
| 67 |  | Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer | 1e-3 | -7.668e+00 | 0.0017 | 1251.0 | 20.43% | 8186.3 | 18.76% | motif file (matrix) |
pdf |
| 68 |  | Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer | 1e-3 | -7.428e+00 | 0.0022 | 763.0 | 12.46% | 4858.3 | 11.13% | motif file (matrix) |
pdf |
| 69 |  | Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer | 1e-3 | -7.356e+00 | 0.0023 | 303.0 | 4.95% | 1790.2 | 4.10% | motif file (matrix) |
pdf |
| 70 |  | LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer | 1e-3 | -7.281e+00 | 0.0024 | 38.0 | 0.62% | 152.4 | 0.35% | motif file (matrix) |
pdf |
| 71 |  | TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer | 1e-3 | -7.072e+00 | 0.0029 | 92.0 | 1.50% | 464.0 | 1.06% | motif file (matrix) |
pdf |
| 72 |  | Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer | 1e-2 | -6.451e+00 | 0.0054 | 1358.0 | 22.18% | 9005.2 | 20.63% | motif file (matrix) |
pdf |
| 73 |  | FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer | 1e-2 | -6.365e+00 | 0.0058 | 257.0 | 4.20% | 1521.4 | 3.49% | motif file (matrix) |
pdf |
| 74 |  | JunD(bZIP)/K562-JunD-ChIP-Seq/Homer | 1e-2 | -6.182e+00 | 0.0069 | 59.0 | 0.96% | 281.6 | 0.65% | motif file (matrix) |
pdf |
| 75 |  | Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer | 1e-2 | -6.142e+00 | 0.0071 | 478.0 | 7.81% | 2994.1 | 6.86% | motif file (matrix) |
pdf |
| 76 |  | PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer | 1e-2 | -6.074e+00 | 0.0074 | 215.0 | 3.51% | 1257.8 | 2.88% | motif file (matrix) |
pdf |
| 77 |  | RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer | 1e-2 | -6.071e+00 | 0.0074 | 500.0 | 8.17% | 3145.4 | 7.21% | motif file (matrix) |
pdf |
| 78 |  | HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer | 1e-2 | -5.967e+00 | 0.0081 | 223.0 | 3.64% | 1312.4 | 3.01% | motif file (matrix) |
pdf |
| 79 |  | E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.564e+00 | 0.0119 | 252.0 | 4.12% | 1514.1 | 3.47% | motif file (matrix) |
pdf |
| 80 |  | USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer | 1e-2 | -5.274e+00 | 0.0157 | 254.0 | 4.15% | 1538.0 | 3.52% | motif file (matrix) |
pdf |
| 81 |  | RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer | 1e-2 | -5.200e+00 | 0.0168 | 782.0 | 12.77% | 5110.7 | 11.71% | motif file (matrix) |
pdf |
| 82 |  | GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-2 | -5.055e+00 | 0.0191 | 35.0 | 0.57% | 157.5 | 0.36% | motif file (matrix) |
pdf |
| 83 |  | PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer | 1e-2 | -5.001e+00 | 0.0199 | 642.0 | 10.49% | 4163.6 | 9.54% | motif file (matrix) |
pdf |
| 84 |  | ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer | 1e-2 | -4.995e+00 | 0.0199 | 675.0 | 11.02% | 4389.9 | 10.06% | motif file (matrix) |
pdf |
| 85 |  | Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer | 1e-2 | -4.987e+00 | 0.0199 | 1838.0 | 30.02% | 12474.8 | 28.58% | motif file (matrix) |
pdf |
| 86 |  | NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-2 | -4.935e+00 | 0.0206 | 36.0 | 0.59% | 164.1 | 0.38% | motif file (matrix) |
pdf |
| 87 |  | GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-2 | -4.862e+00 | 0.0219 | 44.0 | 0.72% | 211.7 | 0.49% | motif file (matrix) |
pdf |
| 88 |  | Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer | 1e-2 | -4.861e+00 | 0.0219 | 731.0 | 11.94% | 4781.1 | 10.95% | motif file (matrix) |
pdf |
| 89 |  | ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer | 1e-2 | -4.753e+00 | 0.0238 | 1069.0 | 17.46% | 7122.3 | 16.32% | motif file (matrix) |
pdf |
| 90 |  | bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer | 1e-2 | -4.707e+00 | 0.0247 | 181.0 | 2.96% | 1077.5 | 2.47% | motif file (matrix) |
pdf |
| 91 |  | Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer | 1e-2 | -4.610e+00 | 0.0269 | 213.0 | 3.48% | 1290.7 | 2.96% | motif file (matrix) |
pdf |