| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File | |
| 1 | | NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer | 1e-5 | -1.160e+01 | 0.0022 | 88.0 | 0.38% | 22.2 | 0.23% | motif file (matrix) | |
| 2 | | p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer | 1e-4 | -1.094e+01 | 0.0022 | 96.0 | 0.41% | 25.7 | 0.27% | motif file (matrix) | |
| 3 | | ETS(ETS)/Promoter/Homer | 1e-3 | -8.582e+00 | 0.0154 | 1198.0 | 5.17% | 445.6 | 4.67% | motif file (matrix) | |
| 4 | | T1ISRE(IRF)/Ifnb-Exp/Homer | 1e-3 | -7.629e+00 | 0.0299 | 106.0 | 0.46% | 31.8 | 0.33% | motif file (matrix) | |
| 5 | | Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-2 | -6.855e+00 | 0.0519 | 943.0 | 4.07% | 351.8 | 3.69% | motif file (matrix) | |
| 6 | | Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-2 | -6.002e+00 | 0.1014 | 1191.0 | 5.14% | 452.6 | 4.75% | motif file (matrix) | |
| 7 | | GFX(?)/Promoter/Homer | 1e-2 | -5.677e+00 | 0.1203 | 36.0 | 0.16% | 9.3 | 0.10% | motif file (matrix) |