Homer de novo Motif Results (Motifs/delHx-Specific.1.5.Middle/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 40272
Total background sequences = 40021
* - possible false positive

Rank	Motif	P-value	log P-pvalue	% of Targets	% of Background	STD(Bg STD)	Best Match/Details	Motif File
1		1e-1214	-2.798e+03	15.87%	5.55%	52.2bp (59.3bp)	FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer(0.941) More Information \| Similar Motifs Found	motif file (matrix)
2		1e-799	-1.841e+03	17.98%	8.45%	53.5bp (58.6bp)	Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer(0.978) More Information \| Similar Motifs Found	motif file (matrix)
3		1e-785	-1.809e+03	6.47%	1.54%	48.8bp (57.2bp)	BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer(0.930) More Information \| Similar Motifs Found	motif file (matrix)
4		1e-561	-1.294e+03	23.79%	14.25%	53.7bp (61.4bp)	Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer(0.936) More Information \| Similar Motifs Found	motif file (matrix)
5		1e-424	-9.779e+02	21.06%	13.10%	54.6bp (59.4bp)	MA0143.3_Sox2/Jaspar(0.958) More Information \| Similar Motifs Found	motif file (matrix)
6		1e-323	-7.440e+02	17.38%	10.95%	53.6bp (57.9bp)	POL003.1_GC-box/Jaspar(0.949) More Information \| Similar Motifs Found	motif file (matrix)
7		1e-284	-6.540e+02	12.39%	7.29%	54.0bp (57.3bp)	Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer(0.969) More Information \| Similar Motifs Found	motif file (matrix)
8		1e-274	-6.316e+02	9.16%	4.91%	52.7bp (56.9bp)	Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer(0.963) More Information \| Similar Motifs Found	motif file (matrix)
9		1e-230	-5.308e+02	2.71%	0.85%	53.0bp (61.2bp)	MA0153.1_HNF1B/Jaspar(0.867) More Information \| Similar Motifs Found	motif file (matrix)
10		1e-141	-3.270e+02	6.34%	3.71%	55.2bp (56.8bp)	MA0090.1_TEAD1/Jaspar(0.939) More Information \| Similar Motifs Found	motif file (matrix)
11		1e-123	-2.849e+02	4.06%	2.14%	55.4bp (59.1bp)	CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer(0.875) More Information \| Similar Motifs Found	motif file (matrix)
12		1e-117	-2.708e+02	3.68%	1.91%	53.5bp (61.8bp)	Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer(0.743) More Information \| Similar Motifs Found	motif file (matrix)
13		1e-85	-1.958e+02	2.17%	1.04%	52.9bp (54.2bp)	Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer(0.935) More Information \| Similar Motifs Found	motif file (matrix)
14		1e-76	-1.758e+02	3.50%	2.06%	52.7bp (54.0bp)	Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer(0.950) More Information \| Similar Motifs Found	motif file (matrix)
15		1e-51	-1.188e+02	3.48%	2.27%	54.6bp (55.7bp)	ETS(ETS)/Promoter/Homer(0.946) More Information \| Similar Motifs Found	motif file (matrix)
16		1e-40	-9.225e+01	0.68%	0.27%	52.1bp (57.6bp)	GFY(?)/Promoter/Homer(0.990) More Information \| Similar Motifs Found	motif file (matrix)
17		1e-34	-8.050e+01	3.49%	2.48%	55.5bp (56.8bp)	Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer(0.756) More Information \| Similar Motifs Found	motif file (matrix)
18		1e-34	-7.963e+01	2.50%	1.66%	54.2bp (56.8bp)	NRF1/Promoter/Homer(0.824) More Information \| Similar Motifs Found	motif file (matrix)
19		1e-17	-4.065e+01	0.13%	0.03%	55.5bp (20.0bp)	MA0468.1_DUX4/Jaspar(0.668) More Information \| Similar Motifs Found	motif file (matrix)