Homer de novo Motif Results (Motifs/WT-Specific.2.High/)

Rank	Motif	P-value	log P-pvalue	% of Targets	% of Background	STD(Bg STD)	Best Match/Details	Motif File
1		1e-285	-6.566e+02	23.82%	9.32%	51.6bp (59.0bp)	MA0148.3_FOXA1/Jaspar(0.956) More Information | Similar Motifs Found	motif file (matrix)
2		1e-183	-4.219e+02	8.47%	2.05%	48.2bp (60.5bp)	BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer(0.908) More Information | Similar Motifs Found	motif file (matrix)
3		1e-108	-2.498e+02	25.07%	15.01%	54.2bp (60.4bp)	Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer(0.943) More Information | Similar Motifs Found	motif file (matrix)
4		1e-96	-2.227e+02	15.02%	7.67%	52.8bp (62.4bp)	Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer(0.930) More Information | Similar Motifs Found	motif file (matrix)
5		1e-78	-1.797e+02	26.04%	17.20%	55.0bp (60.6bp)	Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer(0.762) More Information | Similar Motifs Found	motif file (matrix)
6		1e-70	-1.627e+02	12.43%	6.61%	54.4bp (59.9bp)	MA0036.2_GATA2/Jaspar(0.927) More Information | Similar Motifs Found	motif file (matrix)
7		1e-49	-1.131e+02	3.77%	1.33%	53.8bp (58.6bp)	Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer(0.820) More Information | Similar Motifs Found	motif file (matrix)
8		1e-40	-9.364e+01	6.84%	3.55%	53.1bp (58.2bp)	MA0079.3_SP1/Jaspar(0.897) More Information | Similar Motifs Found	motif file (matrix)
9		1e-35	-8.203e+01	20.06%	14.60%	55.8bp (61.4bp)	MA0461.1_Atoh1/Jaspar(0.927) More Information | Similar Motifs Found	motif file (matrix)
10		1e-33	-7.798e+01	0.83%	0.10%	55.3bp (63.7bp)	PB0117.1_Eomes_2/Jaspar(0.813) More Information | Similar Motifs Found	motif file (matrix)
11		1e-25	-5.845e+01	6.08%	3.55%	54.9bp (58.9bp)	PB0207.1_Zic3_2/Jaspar(0.696) More Information | Similar Motifs Found	motif file (matrix)
12		1e-18	-4.166e+01	2.06%	0.91%	54.2bp (57.9bp)	PB0110.1_Bcl6b_2/Jaspar(0.704) More Information | Similar Motifs Found	motif file (matrix)
13		1e-16	-3.701e+01	0.74%	0.18%	51.8bp (60.0bp)	Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer(0.749) More Information | Similar Motifs Found	motif file (matrix)
14		1e-15	-3.618e+01	1.20%	0.43%	57.5bp (56.3bp)	MA0031.1_FOXD1/Jaspar(0.686) More Information | Similar Motifs Found	motif file (matrix)
15		1e-15	-3.598e+01	4.16%	2.52%	57.9bp (58.3bp)	FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer(0.623) More Information | Similar Motifs Found	motif file (matrix)
16		1e-13	-2.996e+01	0.42%	0.08%	45.7bp (52.7bp)	Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer(0.664) More Information | Similar Motifs Found	motif file (matrix)
17		1e-12	-2.970e+01	0.15%	0.01%	30.2bp (34.0bp)	MA0117.1_Mafb/Jaspar(0.634) More Information | Similar Motifs Found	motif file (matrix)
18		1e-12	-2.970e+01	0.15%	0.00%	58.8bp (0.0bp)	PB0028.1_Hbp1_1/Jaspar(0.601) More Information | Similar Motifs Found	motif file (matrix)
19		1e-12	-2.851e+01	4.46%	2.93%	55.4bp (59.2bp)	MA0090.1_TEAD1/Jaspar(0.938) More Information | Similar Motifs Found	motif file (matrix)
20 *		1e-10	-2.481e+01	0.38%	0.07%	45.5bp (42.7bp)	PB0164.1_Smad3_2/Jaspar(0.689) More Information | Similar Motifs Found	motif file (matrix)
21 *		1e-9	-2.232e+01	0.14%	0.01%	31.7bp (29.2bp)	PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer(0.774) More Information | Similar Motifs Found	motif file (matrix)
22 *		1e-8	-2.009e+01	0.15%	0.01%	55.1bp (0.4bp)	PH0014.1_Cphx/Jaspar(0.714) More Information | Similar Motifs Found	motif file (matrix)
23 *		1e-8	-1.984e+01	0.18%	0.02%	61.4bp (28.4bp)	MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar(0.694) More Information | Similar Motifs Found	motif file (matrix)
24 *		1e-7	-1.731e+01	2.47%	1.61%	52.3bp (60.0bp)	MA0512.1_Rxra/Jaspar(0.754) More Information | Similar Motifs Found	motif file (matrix)
25 *		1e-7	-1.696e+01	0.65%	0.27%	49.7bp (56.0bp)	MA0124.1_NKX3-1/Jaspar(0.671) More Information | Similar Motifs Found	motif file (matrix)
26 *		1e-6	-1.465e+01	2.04%	1.33%	56.4bp (59.6bp)	POL010.1_DCE_S_III/Jaspar(0.664) More Information | Similar Motifs Found	motif file (matrix)
27 *		1e-6	-1.446e+01	0.14%	0.02%	54.7bp (72.4bp)	Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer(0.643) More Information | Similar Motifs Found	motif file (matrix)
28 *		1e-5	-1.277e+01	1.00%	0.56%	54.0bp (61.8bp)	PB0195.1_Zbtb3_2/Jaspar(0.664) More Information | Similar Motifs Found	motif file (matrix)
29 *		1e-4	-1.021e+01	2.07%	1.47%	58.6bp (57.3bp)	STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer(0.740) More Information | Similar Motifs Found	motif file (matrix)