Homer de novo Motif Results (Motifs/WT-Specific.2.High.BG/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 7191
Total background sequences = 5989
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 1e-333-7.677e+0218.44%5.39%51.4bp (55.9bp)Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer(0.967)
More Information | Similar Motifs Found		motif file (matrix)
2 1e-147-3.404e+026.70%1.59%47.7bp (74.1bp)MA0139.1_CTCF/Jaspar(0.880)
More Information | Similar Motifs Found		motif file (matrix)
3 1e-105-2.428e+0224.99%15.08%53.0bp (61.0bp)PH0097.1_Lhx6_2/Jaspar(0.816)
More Information | Similar Motifs Found		motif file (matrix)
4 1e-90-2.084e+0223.47%14.47%53.7bp (59.7bp)MA0087.1_Sox5/Jaspar(0.772)
More Information | Similar Motifs Found		motif file (matrix)
5 1e-76-1.750e+028.52%3.73%53.4bp (63.0bp)Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer(0.911)
More Information | Similar Motifs Found		motif file (matrix)
6 1e-73-1.689e+0221.13%13.34%56.0bp (71.1bp)Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer(0.766)
More Information | Similar Motifs Found		motif file (matrix)
7 1e-58-1.341e+0213.70%8.05%55.5bp (57.6bp)GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer(0.891)
More Information | Similar Motifs Found		motif file (matrix)
8 1e-54-1.259e+020.64%0.01%45.5bp (25.4bp)PH0137.1_Pitx1/Jaspar(0.815)
More Information | Similar Motifs Found		motif file (matrix)
9 1e-50-1.165e+020.74%0.04%54.5bp (46.9bp)PB0156.1_Plagl1_2/Jaspar(0.612)
More Information | Similar Motifs Found		motif file (matrix)
10 1e-48-1.128e+0215.73%10.09%54.4bp (79.3bp)MA0599.1_KLF5/Jaspar(0.947)
More Information | Similar Motifs Found		motif file (matrix)
11 1e-39-9.041e+010.50%0.02%56.4bp (24.1bp)Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer(0.929)
More Information | Similar Motifs Found		motif file (matrix)
12 1e-38-8.941e+010.78%0.07%55.3bp (47.4bp)POL013.1_MED-1/Jaspar(0.695)
More Information | Similar Motifs Found		motif file (matrix)
13 1e-38-8.811e+010.70%0.05%57.6bp (41.5bp)PB0044.1_Mtf1_1/Jaspar(0.639)
More Information | Similar Motifs Found		motif file (matrix)
14 1e-35-8.281e+011.39%0.29%56.3bp (12.6bp)PB0076.1_Sp4_1/Jaspar(0.825)
More Information | Similar Motifs Found		motif file (matrix)
15 1e-31-7.367e+010.43%0.02%61.8bp (0.0bp)POL013.1_MED-1/Jaspar(0.605)
More Information | Similar Motifs Found		motif file (matrix)
16 1e-27-6.399e+010.39%0.02%54.9bp (0.0bp)PB0197.1_Zfp105_2/Jaspar(0.670)
More Information | Similar Motifs Found		motif file (matrix)
17 1e-26-6.109e+010.61%0.08%50.5bp (53.2bp)Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer(0.749)
More Information | Similar Motifs Found		motif file (matrix)
18 1e-26-6.084e+010.38%0.03%51.0bp (36.0bp)MA0076.2_ELK4/Jaspar(0.819)
More Information | Similar Motifs Found		motif file (matrix)
19 1e-24-5.667e+010.58%0.08%60.0bp (25.4bp)Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer(0.635)
More Information | Similar Motifs Found		motif file (matrix)
20 1e-24-5.593e+010.44%0.05%49.5bp (18.7bp)Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer(0.830)
More Information | Similar Motifs Found		motif file (matrix)
21 1e-24-5.552e+010.51%0.06%57.8bp (35.7bp)PB0159.1_Rfx4_2/Jaspar(0.722)
More Information | Similar Motifs Found		motif file (matrix)
22 1e-24-5.552e+010.51%0.05%56.5bp (36.4bp)MA0052.2_MEF2A/Jaspar(0.607)
More Information | Similar Motifs Found		motif file (matrix)
23 1e-23-5.446e+010.63%0.08%46.1bp (30.0bp)MA0467.1_Crx/Jaspar(0.714)
More Information | Similar Motifs Found		motif file (matrix)
24 1e-21-5.041e+010.70%0.13%53.9bp (59.5bp)MA0117.1_Mafb/Jaspar(0.706)
More Information | Similar Motifs Found		motif file (matrix)
25 1e-21-4.837e+012.86%1.37%54.5bp (56.1bp)PB0084.1_Tcf7l2_1/Jaspar(0.948)
More Information | Similar Motifs Found		motif file (matrix)
26 1e-20-4.824e+010.40%0.04%58.8bp (85.8bp)PH0162.1_Six2/Jaspar(0.713)
More Information | Similar Motifs Found		motif file (matrix)
27 1e-19-4.564e+010.31%0.03%53.1bp (0.0bp)PB0206.1_Zic2_2/Jaspar(0.677)
More Information | Similar Motifs Found		motif file (matrix)
28 1e-19-4.398e+010.50%0.08%54.6bp (54.1bp)PB0139.1_Irf5_2/Jaspar(0.665)
More Information | Similar Motifs Found		motif file (matrix)
29 1e-18-4.201e+010.86%0.22%49.8bp (29.4bp)MA0079.3_SP1/Jaspar(0.717)
More Information | Similar Motifs Found		motif file (matrix)
30 1e-18-4.165e+010.63%0.13%59.3bp (43.7bp)MA0130.1_ZNF354C/Jaspar(0.791)
More Information | Similar Motifs Found		motif file (matrix)
31 1e-17-4.085e+010.36%0.04%61.5bp (9.9bp)MA0062.2_GABPA/Jaspar(0.643)
More Information | Similar Motifs Found		motif file (matrix)
32 1e-17-3.976e+010.42%0.06%52.4bp (5.2bp)PB0180.1_Sp4_2/Jaspar(0.662)
More Information | Similar Motifs Found		motif file (matrix)
33 1e-15-3.676e+010.97%0.30%57.0bp (73.5bp)MA0164.1_Nr2e3/Jaspar(0.711)
More Information | Similar Motifs Found		motif file (matrix)
34 1e-15-3.611e+010.33%0.05%54.3bp (18.8bp)MA0103.2_ZEB1/Jaspar(0.729)
More Information | Similar Motifs Found		motif file (matrix)
35 *1e-11-2.584e+010.49%0.13%60.4bp (0.0bp)Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer(0.621)
More Information | Similar Motifs Found		motif file (matrix)
36 *1e-10-2.512e+010.36%0.07%49.2bp (31.0bp)PB0185.1_Tcf1_2/Jaspar(0.671)
More Information | Similar Motifs Found		motif file (matrix)
37 *1e-10-2.342e+010.35%0.07%53.2bp (23.4bp)POL008.1_DCE_S_I/Jaspar(0.740)
More Information | Similar Motifs Found		motif file (matrix)