Homer de novo Motif Results (Motifs/WT-Specific.2.Middle.BG/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 843
Total background sequences = 703
* - possible false positive

Rank	Motif	P-value	log P-pvalue	% of Targets	% of Background	STD(Bg STD)	Best Match/Details	Motif File
1		1e-91	-2.095e+02	7.95%	0.20%	43.3bp (41.5bp)	MA0046.1_HNF1A/Jaspar(0.873) More Information \| Similar Motifs Found	motif file (matrix)
2		1e-83	-1.932e+02	7.47%	0.26%	48.5bp (9.9bp)	BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer(0.921) More Information \| Similar Motifs Found	motif file (matrix)
3		1e-59	-1.381e+02	7.95%	0.56%	49.7bp (43.1bp)	POL006.1_BREu/Jaspar(0.672) More Information \| Similar Motifs Found	motif file (matrix)
4		1e-58	-1.346e+02	5.69%	0.26%	54.7bp (36.6bp)	MA0155.1_INSM1/Jaspar(0.640) More Information \| Similar Motifs Found	motif file (matrix)
5		1e-51	-1.197e+02	5.22%	0.27%	59.9bp (62.9bp)	Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer(0.728) More Information \| Similar Motifs Found	motif file (matrix)
6		1e-51	-1.197e+02	5.22%	0.21%	41.6bp (28.7bp)	Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer(0.736) More Information \| Similar Motifs Found	motif file (matrix)
7		1e-44	-1.017e+02	4.63%	0.27%	54.9bp (2.2bp)	POL013.1_MED-1/Jaspar(0.692) More Information \| Similar Motifs Found	motif file (matrix)
8		1e-41	-9.505e+01	9.37%	1.38%	56.0bp (44.0bp)	MA0114.2_HNF4A/Jaspar(0.802) More Information \| Similar Motifs Found	motif file (matrix)
9		1e-40	-9.212e+01	6.05%	0.53%	48.9bp (20.2bp)	MA0111.1_Spz1/Jaspar(0.676) More Information \| Similar Motifs Found	motif file (matrix)
10		1e-37	-8.608e+01	8.42%	1.27%	47.6bp (111.3bp)	PB0076.1_Sp4_1/Jaspar(0.855) More Information \| Similar Motifs Found	motif file (matrix)
11		1e-35	-8.150e+01	4.86%	0.41%	58.3bp (52.3bp)	Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer(0.699) More Information \| Similar Motifs Found	motif file (matrix)
12		1e-35	-8.150e+01	4.86%	0.36%	55.2bp (13.7bp)	MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer(0.621) More Information \| Similar Motifs Found	motif file (matrix)
13		1e-33	-7.755e+01	3.80%	0.21%	56.7bp (70.7bp)	MA0160.1_NR4A2/Jaspar(0.676) More Information \| Similar Motifs Found	motif file (matrix)
14		1e-33	-7.755e+01	3.80%	0.11%	58.8bp (19.4bp)	PB0168.1_Sox14_2/Jaspar(0.725) More Information \| Similar Motifs Found	motif file (matrix)
15		1e-33	-7.755e+01	3.80%	0.18%	59.2bp (17.0bp)	MA0117.1_Mafb/Jaspar(0.662) More Information \| Similar Motifs Found	motif file (matrix)
16		1e-31	-7.291e+01	4.51%	0.38%	57.7bp (22.3bp)	MA0512.1_Rxra/Jaspar(0.636) More Information \| Similar Motifs Found	motif file (matrix)
17		1e-30	-7.103e+01	5.10%	0.53%	53.4bp (36.2bp)	MA0146.2_Zfx/Jaspar(0.606) More Information \| Similar Motifs Found	motif file (matrix)
18		1e-30	-7.103e+01	5.10%	0.43%	57.2bp (42.4bp)	PB0196.1_Zbtb7b_2/Jaspar(0.685) More Information \| Similar Motifs Found	motif file (matrix)
19		1e-30	-7.093e+01	3.56%	0.23%	52.0bp (36.2bp)	PB0118.1_Esrra_2/Jaspar(0.620) More Information \| Similar Motifs Found	motif file (matrix)
20		1e-29	-6.900e+01	18.03%	6.45%	52.6bp (62.7bp)	MA0090.1_TEAD1/Jaspar(0.912) More Information \| Similar Motifs Found	motif file (matrix)
21		1e-26	-6.105e+01	4.63%	0.56%	48.9bp (32.6bp)	MA0099.2_JUN::FOS/Jaspar(0.809) More Information \| Similar Motifs Found	motif file (matrix)
22		1e-25	-5.812e+01	3.08%	0.13%	52.5bp (8.4bp)	Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer(0.718) More Information \| Similar Motifs Found	motif file (matrix)
23		1e-24	-5.648e+01	3.80%	0.41%	48.3bp (37.3bp)	Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer(0.849) More Information \| Similar Motifs Found	motif file (matrix)
24		1e-24	-5.621e+01	4.39%	0.52%	45.7bp (21.1bp)	TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer(0.683) More Information \| Similar Motifs Found	motif file (matrix)
25		1e-22	-5.149e+01	4.15%	0.50%	62.0bp (19.3bp)	PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer(0.685) More Information \| Similar Motifs Found	motif file (matrix)
26		1e-22	-5.126e+01	3.56%	0.42%	60.8bp (43.2bp)	PB0132.1_Hbp1_2/Jaspar(0.670) More Information \| Similar Motifs Found	motif file (matrix)
27		1e-22	-5.094e+01	4.63%	0.64%	56.2bp (36.2bp)	MA0152.1_NFATC2/Jaspar(0.674) More Information \| Similar Motifs Found	motif file (matrix)
28		1e-20	-4.616e+01	3.32%	0.42%	53.9bp (42.0bp)	MA0035.3_Gata1/Jaspar(0.779) More Information \| Similar Motifs Found	motif file (matrix)
29		1e-19	-4.459e+01	4.27%	0.57%	56.7bp (43.2bp)	MA0117.1_Mafb/Jaspar(0.687) More Information \| Similar Motifs Found	motif file (matrix)
30		1e-18	-4.299e+01	2.49%	0.27%	47.7bp (72.9bp)	PB0133.1_Hic1_2/Jaspar(0.665) More Information \| Similar Motifs Found	motif file (matrix)
31		1e-18	-4.240e+01	3.68%	0.56%	54.8bp (45.4bp)	MA0117.1_Mafb/Jaspar(0.639) More Information \| Similar Motifs Found	motif file (matrix)
32		1e-16	-3.880e+01	2.97%	0.41%	50.9bp (46.1bp)	POL006.1_BREu/Jaspar(0.612) More Information \| Similar Motifs Found	motif file (matrix)
33		1e-15	-3.503e+01	7.47%	2.27%	55.9bp (43.2bp)	MA0498.1_Meis1/Jaspar(0.742) More Information \| Similar Motifs Found	motif file (matrix)
34		1e-14	-3.408e+01	2.73%	0.34%	49.3bp (100.5bp)	Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer(0.636) More Information \| Similar Motifs Found	motif file (matrix)
35 *		1e-11	-2.587e+01	2.73%	0.47%	54.1bp (56.9bp)	MA0117.1_Mafb/Jaspar(0.669) More Information \| Similar Motifs Found	motif file (matrix)
36 *		1e-5	-1.367e+01	1.90%	0.45%	56.2bp (2.7bp)	AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer(0.770) More Information \| Similar Motifs Found	motif file (matrix)