Homer de novo Motif Results (Motifs/delHx-Specific.4.Middle/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 5762
Total background sequences = 43886
* - possible false positive

Rank	Motif	P-value	log P-pvalue	% of Targets	% of Background	STD(Bg STD)	Best Match/Details	Motif File
1		1e-186	-4.299e+02	31.48%	15.96%	52.2bp (59.5bp)	FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer(0.939) More Information \| Similar Motifs Found	motif file (matrix)
2		1e-135	-3.126e+02	34.67%	20.54%	53.2bp (59.3bp)	Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer(0.889) More Information \| Similar Motifs Found	motif file (matrix)
3		1e-118	-2.739e+02	5.03%	0.88%	47.5bp (59.0bp)	BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer(0.917) More Information \| Similar Motifs Found	motif file (matrix)
4		1e-57	-1.330e+02	31.06%	21.91%	54.7bp (59.3bp)	Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer(0.928) More Information \| Similar Motifs Found	motif file (matrix)
5		1e-57	-1.325e+02	13.45%	7.34%	53.2bp (58.5bp)	PB0205.1_Zic1_2/Jaspar(0.801) More Information \| Similar Motifs Found	motif file (matrix)
6		1e-49	-1.141e+02	8.47%	4.06%	53.2bp (59.4bp)	Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer(0.944) More Information \| Similar Motifs Found	motif file (matrix)
7		1e-19	-4.596e+01	1.77%	0.60%	52.3bp (58.1bp)	PB0207.1_Zic3_2/Jaspar(0.697) More Information \| Similar Motifs Found	motif file (matrix)
8		1e-17	-4.137e+01	3.09%	1.49%	53.0bp (58.5bp)	PB0071.1_Sox4_1/Jaspar(0.737) More Information \| Similar Motifs Found	motif file (matrix)
9		1e-17	-4.100e+01	1.23%	0.35%	57.9bp (59.1bp)	PB0126.1_Gata5_2/Jaspar(0.716) More Information \| Similar Motifs Found	motif file (matrix)
10		1e-16	-3.900e+01	14.68%	11.02%	55.5bp (58.8bp)	MA0502.1_NFYB/Jaspar(0.690) More Information \| Similar Motifs Found	motif file (matrix)
11		1e-16	-3.825e+01	1.68%	0.63%	47.0bp (62.1bp)	Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer(0.784) More Information \| Similar Motifs Found	motif file (matrix)
12		1e-16	-3.760e+01	2.12%	0.90%	52.8bp (54.4bp)	EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer(0.915) More Information \| Similar Motifs Found	motif file (matrix)
13		1e-14	-3.431e+01	5.08%	3.11%	55.4bp (57.9bp)	PB0166.1_Sox12_2/Jaspar(0.750) More Information \| Similar Motifs Found	motif file (matrix)
14		1e-14	-3.226e+01	2.34%	1.12%	56.1bp (60.7bp)	PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer(0.597) More Information \| Similar Motifs Found	motif file (matrix)
15		1e-12	-2.972e+01	0.31%	0.03%	54.4bp (66.1bp)	FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer(0.691) More Information \| Similar Motifs Found	motif file (matrix)
16		1e-12	-2.909e+01	0.71%	0.18%	54.6bp (59.0bp)	PB0096.1_Zfp187_1/Jaspar(0.683) More Information \| Similar Motifs Found	motif file (matrix)
17		1e-12	-2.888e+01	1.30%	0.49%	58.1bp (55.9bp)	Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer(0.696) More Information \| Similar Motifs Found	motif file (matrix)
18		1e-12	-2.858e+01	0.36%	0.05%	49.0bp (50.9bp)	Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer(0.703) More Information \| Similar Motifs Found	motif file (matrix)
19 *		1e-11	-2.617e+01	11.49%	8.82%	56.9bp (57.6bp)	TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer(0.872) More Information \| Similar Motifs Found	motif file (matrix)
20 *		1e-11	-2.536e+01	1.75%	0.83%	58.4bp (60.8bp)	MA0103.2_ZEB1/Jaspar(0.865) More Information \| Similar Motifs Found	motif file (matrix)
21 *		1e-9	-2.285e+01	0.12%	0.00%	52.4bp (0.0bp)	PB0128.1_Gcm1_2/Jaspar(0.599) More Information \| Similar Motifs Found	motif file (matrix)
22 *		1e-9	-2.205e+01	0.40%	0.08%	50.5bp (44.7bp)	PB0093.1_Zfp105_1/Jaspar(0.783) More Information \| Similar Motifs Found	motif file (matrix)
23 *		1e-8	-1.900e+01	1.53%	0.78%	52.0bp (58.0bp)	ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer(0.656) More Information \| Similar Motifs Found	motif file (matrix)
24 *		1e-7	-1.840e+01	0.28%	0.04%	49.5bp (51.8bp)	PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer(0.615) More Information \| Similar Motifs Found	motif file (matrix)
25 *		1e-7	-1.812e+01	0.12%	0.01%	69.3bp (70.3bp)	SD0003.1_at_AC_acceptor/Jaspar(0.746) More Information \| Similar Motifs Found	motif file (matrix)
26 *		1e-7	-1.623e+01	0.14%	0.01%	61.9bp (35.3bp)	PH0012.1_Cdx1/Jaspar(0.672) More Information \| Similar Motifs Found	motif file (matrix)
27 *		1e-6	-1.505e+01	0.09%	0.00%	51.8bp (0.0bp)	MA0100.2_Myb/Jaspar(0.598) More Information \| Similar Motifs Found	motif file (matrix)
28 *		1e-5	-1.321e+01	0.14%	0.01%	58.6bp (68.7bp)	POL003.1_GC-box/Jaspar(0.547) More Information \| Similar Motifs Found	motif file (matrix)
29 *		1e-5	-1.204e+01	0.12%	0.01%	37.3bp (41.7bp)	MF0009.1_TRP(MYB)_class/Jaspar(0.681) More Information \| Similar Motifs Found	motif file (matrix)
30 *		1e-5	-1.169e+01	0.09%	0.00%	51.3bp (38.6bp)	Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer(0.675) More Information \| Similar Motifs Found	motif file (matrix)
31 *		1e-4	-1.058e+01	0.33%	0.11%	63.7bp (57.1bp)	MA0028.1_ELK1/Jaspar(0.736) More Information \| Similar Motifs Found	motif file (matrix)
32 *		1e-3	-8.736e+00	0.07%	0.01%	55.5bp (36.0bp)	PB0200.1_Zfp187_2/Jaspar(0.756) More Information \| Similar Motifs Found	motif file (matrix)
33 *		1e-2	-4.841e+00	0.03%	0.00%	45.9bp (45.5bp)	Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer(0.635) More Information \| Similar Motifs Found	motif file (matrix)